PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011659t1

Common Name

TCM_011659

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 373aa MW: 41171.1 Da PI: 6.9252

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011659t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Thecc1EG011659t1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.2e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Thecc1EG011659t1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.3E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.042	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.14E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.25E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.891	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	9.67E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPVTHKPKT DALGSASGNP KDAANLSHMA QWESARLEAE ARLVRESKLV SNPPQNQVGS 180 SSSSAAPQSN NAVAPATRPQ CLDVLKAWQG VVTGLFTFNS DNLQSPTSTL NFMENTLPIS 240 SVGFNDNFVG NSINPCEGDG IVKDSGGNDW KCLEKSNQIP ELKERLDNSM GLHEMAYSSE 300 SAWFQDSYRA ENMMEGYSDI MVCDSVDQQN SSMTPGENLT GTSYASSFEE NKNYWNSILN 360 LVNASPSGSP VF*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKT DALGSASGNP KDAANLSHMA QWESARLEAE ARLVRESKLV SNPPQNQVGS  180
SSSSAAPQSN NAVAPATRPQ CLDVLKAWQG VVTGLFTFNS DNLQSPTSTL NFMENTLPIS  240
SVGFNDNFVG NSINPCEGDG IVKDSGGNDW KCLEKSNQIP ELKERLDNSM GLHEMAYSSE  300
SAWFQDSYRA ENMMEGYSDI MVCDSVDQQN SSMTPGENLT GTSYASSFEE NKNYWNSILN  360
LVNASPSGSP VF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-26	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269\|PubMed:18805951, ECO:0000269\|PubMed:21070410, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007046022.2	0.0	PREDICTED: protein ODORANT1
Swissprot	Q9LE63	1e-119	MY106_ARATH; Transcription factor MYB106
TrEMBL	A0A061EHS7	0.0	A0A061EHS7_THECC; Myb domain protein 106, putative
STRING	EOY01854	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19305	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-117	myb domain protein 16

Link Out ? help Back to Top
Phytozome	Thecc1EG011659t1
Entrez Gene	18610359

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]