PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011658t1
Common NameTCM_011658
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 318aa    MW: 35487.8 Da    PI: 7.189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011658t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT++Ed++l+ +++++G  +W+t +++ g+ R++k+c++rw +yl
  Thecc1EG011658t1 14 KGPWTPDEDQKLLAYIEEHGFANWRTLPEKAGLQRCGKSCRLRWINYL 61
                      79********************************************97 PP
2Myb_DNA-binding52.98.3e-1767111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++ +E++ ++++++ lG++ W++Ia++++ +Rt++++k++w+++
  Thecc1EG011658t1  67 RGKFSVQEEQTIIHLHAFLGNR-WSAIAAHLP-NRTDNEIKNHWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.3965IPR017930Myb domain
SuperFamilySSF466892.51E-3010108IPR009057Homeodomain-like
SMARTSM007172.6E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231568IPR009057Homeodomain-like
CDDcd001672.78E-111661No hitNo description
SMARTSM007173.0E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129419.54266116IPR017930Myb domain
PfamPF002499.3E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2569115IPR009057Homeodomain-like
CDDcd001671.97E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MARSAYCENM GLKKGPWTPD EDQKLLAYIE EHGFANWRTL PEKAGLQRCG KSCRLRWINY  60
LRPDVKRGKF SVQEEQTIIH LHAFLGNRWS AIAAHLPNRT DNEIKNHWNT HIKKRFSKMG  120
IDPTTHKPIS NPLSSAGGGH LRNTGTLSHM AQWEGARLEA EARLVRESKL ESKPSPNNKP  180
GFSARPRSTR TPSAPSTRSQ CLDVLKAWQS VVAGMFAMTN NNLDPPPSTT FLDNSIPVSS  240
TNELDLAAAG STHMEAIIAE DDQLMLDDRS NQIPELNERF DTSMALHDTT YHGTAASGNT  300
IEDFWDISVH DFGYPID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046021.20.0PREDICTED: myb-related protein 330
SwissprotQ9LE633e-92MY106_ARATH; Transcription factor MYB106
TrEMBLA0A061EB420.0A0A061EB42_THECC; Myb domain protein 106, putative
STRINGEOY018530.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2504433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-92myb domain protein 16
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]