PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011624t2
Common NameTCM_011624
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 530aa    MW: 57047.6 Da    PI: 7.7478
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011624t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.51.6e-34243299259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgsefprsYY+Ct++gCpvkkkvers  d++v+ei+Y+g+Hnh+
  Thecc1EG011624t2 243 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPGCPVKKKVERSL-DGQVTEIIYKGQHNHQ 299
                       8****************************************.***************8 PP
2WRKY107.47e-34422480159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Thecc1EG011624t2 422 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 480
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30238301IPR003657WRKY domain
SuperFamilySSF1182909.81E-27240301IPR003657WRKY domain
SMARTSM007744.2E-39242300IPR003657WRKY domain
PfamPF031061.5E-26243299IPR003657WRKY domain
PROSITE profilePS5081124.443243301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37407482IPR003657WRKY domain
SuperFamilySSF1182909.55E-30414482IPR003657WRKY domain
PROSITE profilePS5081138.836417482IPR003657WRKY domain
SMARTSM007741.3E-39422481IPR003657WRKY domain
PfamPF031063.5E-26423480IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAESQEQQHQ PSKTVASQRP TITPPPRPFT EALFNGGSGM MGFSPGPMTL VSNFFSDTDE  60
FKSFSQLLAG AMASPAAAAA AQRPNFPAPP PTTTTEEQGD VSGAVGAGDT GLRFRQNKPA  120
GLVIAQPPPM FTVPPGLSPA SLLESPGFSV FSPGAQGPFG MTHQQALAQV TAQAAQAQMQ  180
ADYSSAPAAS LAQVSSFTAS TTTNQQIPTS LPDSSVTRKE PSRVSHSDPR SQPASFIVDK  240
PADDGYNWRK YGQKQVKGSE FPRSYYKCTH PGCPVKKKVE RSLDGQVTEI IYKGQHNHQP  300
PQSNKRAKDS GSLNGNPNNQ GNSESASQHQ GGNLNILKEG TSAYSMSKKD HESSQATAEH  360
LSGTSDSEEA GDNETVADEK DEDEPDPKRR STEYRVSEPA SSHRTVTEPR IIVQTTSEVD  420
LLDDGYRWRK YGQKVVKGNP YPRSYYKCTT PGCNVRKHVE RASTDPKAVI TTYEGKHNHD  480
VPAAKTSSHN TANSNASQVR TQTVTNSADF GNNSQQRVAH LRLKEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-44243483878Probable WRKY transcription factor 4
2lex_A4e-44243483878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045981.20.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A061EB130.0A0A061EB13_THECC; WRKY DNA-binding protein 4, putative isoform 2
STRINGEOY018120.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-156WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]