PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011624t1 | ||||||||
Common Name | TCM_011624 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 565aa MW: 61013.3 Da PI: 7.8816 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 109.4 | 1.7e-34 | 278 | 334 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct++gCpvkkkvers d++v+ei+Y+g+Hnh+ Thecc1EG011624t1 278 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPGCPVKKKVERSL-DGQVTEIIYKGQHNHQ 334 8****************************************.***************8 PP | |||||||
2 | WRKY | 107.3 | 7.6e-34 | 457 | 515 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+ Thecc1EG011624t1 457 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 515 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-30 | 273 | 336 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.07E-26 | 275 | 336 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-39 | 277 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 278 | 334 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.443 | 278 | 336 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-37 | 442 | 517 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-29 | 449 | 517 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.836 | 452 | 517 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-39 | 457 | 516 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-26 | 458 | 515 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MAESQEQQHQ PSKTVASQRP TITPPPRPFT EALFNGGSGM MGFSPGPMTL VSNFFSDTDE 60 FKSFSQLLAG AMASPAAAAA AQRPNFPAPP PTTTTEEQGD VSGAVGAGDT GLRFRQNKPA 120 GLVIAQPPPM FTVPPGLSPA SLLESPGFSV FSPGAQEHTI FAILIYPLIP FVCCIVRSVC 180 ESSRASTRTE KGPFGMTHQQ ALAQVTAQAA QAQMQADYSS APAASLAQVS SFTASTTTNQ 240 QIPTSLPDSS VTRKEPSRVS HSDPRSQPAS FIVDKPADDG YNWRKYGQKQ VKGSEFPRSY 300 YKCTHPGCPV KKKVERSLDG QVTEIIYKGQ HNHQPPQSNK RAKDSGSLNG NPNNQGNSES 360 ASQHQGGNLN ILKEGTSAYS MSKKDHESSQ ATAEHLSGTS DSEEAGDNET VADEKDEDEP 420 DPKRRSTEYR VSEPASSHRT VTEPRIIVQT TSEVDLLDDG YRWRKYGQKV VKGNPYPRSY 480 YKCTTPGCNV RKHVERASTD PKAVITTYEG KHNHDVPAAK TSSHNTANSN ASQVRTQTVT 540 NSADFGNNSQ QRVAHLRLKE EQIT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-44 | 278 | 518 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-44 | 278 | 518 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00260 | DAP | Transfer from AT2G03340 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007045981.2 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 0.0 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A061EBP0 | 0.0 | A0A061EBP0_THECC; WRKY DNA-binding protein 4, putative isoform 1 | ||||
STRING | EOY01812 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1534 | 27 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-148 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011624t1 |
Entrez Gene | 18610327 |
Publications ? help Back to Top | |||
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