PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011483t1
Common NameTCM_011483
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family SBP
Protein Properties Length: 512aa    MW: 56429.1 Da    PI: 7.8536
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011483t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.21.5e-40171246176
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                       +Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk 
  Thecc1EG011483t1 171 CCQVYGCNEDLSSSKDYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHGLAEFDDGKRSCRKRLAGHNERRRKL 246
                       6*************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-33166233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.146169246IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.65E-38170250IPR004333Transcription factor, SBP-box
PfamPF031105.4E-32172245IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MESWSYGSEG KGLLFTDEMD LPVDAFARSR KALIGWDLKP STDFEAVEGM EFMDFGFADM  60
NKKPFYGNTS MEIFGAEIGN GCAKRVVSPT CMVTSSSYYG EEESGSKHSS SLIESNSQES  120
SLIDLKLGRL TDHRDGQDGK FLKETSVVSS VRPAFMVKRA RTTSSYSHTP CCQVYGCNED  180
LSSSKDYHKR HKVCEAHSKT AKVIVNGIEQ RFCQQCSRFH GLAEFDDGKR SCRKRLAGHN  240
ERRRKLHFNT LSGKPHKLLQ SYQGTKFLGT SIPKRMPFVI PNIFQGDFVY PGRYEQANQS  300
QQVKSEEKPI YNPQSAIPIT NCQLQPKSIF HMQGSGKQYG SGTFSSSTEG FNAPNAASTV  360
KVSSGVSRSD CALSLLSAQS QDLSNHAAGI QMTRPLINHA GHAYHSFEKS AGMSSLEKSN  420
GFYTCGMNPM GAGQVGAAVV SDAGHNANFE VQGDGHFQDS DLLSARYCLS PENGTTVDLL  480
QLSTHLQRVE RHRNSMHVKL ENEDLCYFLT T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-291722451184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045804.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_017971013.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_017971014.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A061E9L50.0A0A061E9L5_THECC; Squamosa promoter-binding protein-like transcription factor family protein, putative
STRINGEOY016360.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-52SBP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]