PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011433t1

Common Name

TCM_011433

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 331aa MW: 36620.6 Da PI: 7.0651

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011433t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.5	3.2e-15	56	105	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P+ ++K + a+ L +++eY++ Lq Thecc1EG011433t1 56 RSKHSVTEQRRRSKINERFQILRDLIPNT----DQKRDTASFLLEVIEYVQFLQ 105 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.8E-23	52	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-19	52	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.323	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-12	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.04E-14	56	109	No hit	No description
SMART	SM00353	2.7E-12	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MRTGKGSQEE EEYEEEEFGS KKQGPSSNQT MSVNATNNIN NTNKDGKNSD KANAIRSKHS 60 VTEQRRRSKI NERFQILRDL IPNTDQKRDT ASFLLEVIEY VQFLQEKVQK YEGSYQGWSS 120 EPTKLMPWRN SHWRVQSFVG HPQAIKNGSG PGSTFAGKFD ENNINIPPTM ITSAQDPVES 180 DHIRDPTSKA MDRQLELANK GMALPIRADN VLVRPLQLPV SEAQSTECLI NSDTLNQQDD 240 LTIEGGRISI SSVYSQGLLN SLTQALQSAG LDLSQANISV QIDVGKRANR GLTSGTSAKD 300 PQNSPNQAMT CLRDVSSGEE SDHAKKRLKK *

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007045739.2	0.0	PREDICTED: transcription factor BIM2
Swissprot	Q9CAA4	1e-124	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A061E9E2	0.0	A0A061E9E2_THECC; BES1-interacting Myc-like protein 2
STRING	EOY01571	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-119	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Thecc1EG011433t1
Entrez Gene	18610165

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]