PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011413t1 | ||||||||
Common Name | TCM_011413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 582aa MW: 62434.5 Da PI: 5.2815 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.3e-09 | 373 | 421 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Thecc1EG011413t1 373 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 421 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.85E-17 | 368 | 439 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.49E-11 | 368 | 425 | No hit | No description |
PROSITE profile | PS50888 | 15.485 | 370 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 371 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-6 | 373 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 376 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MDIGEKDKYE LEKRNENHIN YQAPGMSPDW QFGGANLTST PMSLVSSDNP MAIGSSCASA 60 SVVDSFGTSL WEHTSNSQNL GFCDINAQNG ASSSNGMGIG KGGNSLRSTI DRPFDMSWNA 120 ASSMLRGGIF LPNATGILPQ SLSQLPADSA FIDRAARFSS FNGGNFSDMV NPFGIPESMG 180 LYTRGVGLMQ GPQDIFAISG MKSVSVVESE KSKLNSTEAS KDASLQVENR ATQESPLKNE 240 KKSESLVPSN EEAKQGNGGS GNESDEAEFS GGIGGQDEPS ALDDLSLEPS AKGLSSKKRK 300 RSVQDAEVDQ VKGGEPPVEA AKDNAENQKK GDQNQTTTIN KTTGKQGKQG SQASDPPKEE 360 YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL 420 QRQVEFLSMK LATVNPRLDF NIEGLLAKDI IQSRAGPSSL GFSPDMSVGY PSLHPSQPGL 480 VQAALPVMGN TSDVIRRTLS SQFTPMTGGY KEPNQLSNAW EDDLHNVVQM NYGAGAPSDS 540 QDVNGVSTIR SLESRTLILL LQVYSRQLHY GLLPATLILH S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 296 | 301 | KKRKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146811 | 1e-102 | EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017971624.1 | 0.0 | PREDICTED: transcription factor bHLH49 isoform X1 | ||||
TrEMBL | A0A061EGW0 | 0.0 | A0A061EGW0_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | ||||
STRING | EOY01544 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5900 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-136 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011413t1 |
Entrez Gene | 18610150 |
Publications ? help Back to Top | |||
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