PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011413t1
Common NameTCM_011413
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 582aa    MW: 62434.5 Da    PI: 5.2815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011413t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.3e-09373421355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Thecc1EG011413t1 373 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 421
                       58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-17368439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-11368425No hitNo description
PROSITE profilePS5088815.485370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16371437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6373421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDIGEKDKYE LEKRNENHIN YQAPGMSPDW QFGGANLTST PMSLVSSDNP MAIGSSCASA  60
SVVDSFGTSL WEHTSNSQNL GFCDINAQNG ASSSNGMGIG KGGNSLRSTI DRPFDMSWNA  120
ASSMLRGGIF LPNATGILPQ SLSQLPADSA FIDRAARFSS FNGGNFSDMV NPFGIPESMG  180
LYTRGVGLMQ GPQDIFAISG MKSVSVVESE KSKLNSTEAS KDASLQVENR ATQESPLKNE  240
KKSESLVPSN EEAKQGNGGS GNESDEAEFS GGIGGQDEPS ALDDLSLEPS AKGLSSKKRK  300
RSVQDAEVDQ VKGGEPPVEA AKDNAENQKK GDQNQTTTIN KTTGKQGKQG SQASDPPKEE  360
YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL  420
QRQVEFLSMK LATVNPRLDF NIEGLLAKDI IQSRAGPSSL GFSPDMSVGY PSLHPSQPGL  480
VQAALPVMGN TSDVIRRTLS SQFTPMTGGY KEPNQLSNAW EDDLHNVVQM NYGAGAPSDS  540
QDVNGVSTIR SLESRTLILL LQVYSRQLHY GLLPATLILH S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296301KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468111e-102EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971624.10.0PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLA0A061EGW00.0A0A061EGW0_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY015440.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-136bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]