PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011369t1
Common NameTCM_011369
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 496aa    MW: 55725.4 Da    PI: 7.0362
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011369t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1392.6e-1239982990
              FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                       ++ f+Cs++g+r+++k++ ++ +++++etr gC a lkv++  d+k +vtk+  eH+H+la
  Thecc1EG011369t1 39 QDKVFCCSCQGTRRNDKRD-DNVKSHSPETRFGCLAVLKVSRY-DDKLRVTKFIAEHTHALA 98
                      5689************999.99999****************99.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-84098IPR004330FAR1 DNA binding domain
SuperFamilySSF638296.87E-41160492No hitNo description
Gene3DG3DSA:2.120.10.307.9E-51184493IPR011042Six-bladed beta-propeller, TolB-like
PfamPF030881.7E-27297380IPR018119Strictosidine synthase, conserved region
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009058Biological Processbiosynthetic process
GO:0016844Molecular Functionstrictosidine synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDKETTNTIN KDQLCRRLEF TEDDILPSIE PMEEQNLEQD KVFCCSCQGT RRNDKRDDNV  60
KSHSPETRFG CLAVLKVSRY DDKLRVTKFI AEHTHALASP RKRMFLRSQR AINLPQAVEL  120
EIADCSGIAP KESVGSCASI TMKIFHSFKL LFFVLFLSQN IIQSFQQLPE GDDLHKKYYQ  180
IDLPQVTGPE SIAFDCKNQG PYVGVSDGRI LKWQGPNLGW KEFAIPSSDR DRKLCDGSTN  240
PDLEPTCGRP LGLKFNSATC DLFIADAYFG LLLVGRSGGV AQQLATSAEG VPFKFTNALD  300
IDTNTGVVYF TDSSIIFQRR HYFLSTITFD RSGRLLKYNF RTKEVTVLYK GLAFPNGVAL  360
SKDNSFLLVA ETTKMRILKF NLDSTTDSYT PEQFAQLPKM PDNIKRNDKG EFWVALNSGR  420
GRIQNEGETK LSSETTIPWF TLDPVGVKYD QEGKIMKQLD GNGGIRFDSV SEVEELNGKL  480
YIGSVVKPYV GVLYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2fp8_A8e-6118849320309Strictosidine synthase
2fp8_B8e-6118849320309Strictosidine synthase
2fp9_A8e-6118849320309Strictosidine synthase
2fp9_B8e-6118849320309Strictosidine synthase
2fpb_A8e-6118849320309Strictosidine Synthase
2fpb_B8e-6118849320309Strictosidine Synthase
2fpc_A8e-6118849320309Strictosidine synthase
2fpc_B8e-6118849320309Strictosidine synthase
2v91_A6e-6118849311300STRICTOSIDINE SYNTHASE
2v91_B6e-6118849311300STRICTOSIDINE SYNTHASE
2vaq_A8e-6118849320309STRICTOSIDINE SYNTHASE
2vaq_B8e-6118849320309STRICTOSIDINE SYNTHASE
3v1s_A8e-6118849320309Strictosidine synthase
3v1s_B8e-6118849320309Strictosidine synthase
4imb_A6e-6118849311300Strictosidine synthase
4imb_B6e-6118849311300Strictosidine synthase
4iyg_A6e-6118849311300Strictosidine synthase
4iyg_B6e-6118849311300Strictosidine synthase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970132.10.0PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10
SwissprotQ4V3D99e-99SSL10_ARATH; Protein STRICTOSIDINE SYNTHASE-LIKE 10
TrEMBLA0A061EGR00.0A0A061EGR0_THECC; Calcium-dependent phosphotriesterase superfamily protein, putative
STRINGEOY014990.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-07FAR1-related sequence 5
Publications ? help Back to Top
  1. Fabbri M,Delp G,Schmidt O,Theopold U
    Animal and plant members of a gene family with similarity to alkaloid-synthesizing enzymes.
    Biochem. Biophys. Res. Commun., 2000. 271(1): p. 191-6
    [PMID:10777701]
  2. Shimaoka T, et al.
    Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana.
    Plant Cell Physiol., 2004. 45(6): p. 672-83
    [PMID:15215502]
  3. Bayer EM, et al.
    Arabidopsis cell wall proteome defined using multidimensional protein identification technology.
    Proteomics, 2006. 6(1): p. 301-11
    [PMID:16287169]
  4. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  5. Sohani MM,Schenk PM,Schultz CJ,Schmidt O
    Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses.
    Plant Biol (Stuttg), 2009. 11(1): p. 105-17
    [PMID:19121120]
  6. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]