PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011282t2
Common NameTCM_011282
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 563aa    MW: 63280.4 Da    PI: 6.4704
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011282t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81.1e-12113153445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W ++E+ ll+++++++G g+W+ +a+++g +++  qc+++++
  Thecc1EG011282t2 113 WNADEEILLLEGIEMYGFGNWTEVAEHVG-TKSKSQCIDHYN 153
                       *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250243.8E-16040562IPR016827Transcriptional adaptor 2
SMARTSM002912.3E-94993IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.8125396IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.01E-1453116No hitNo description
PfamPF005691.2E-95387IPR000433Zinc finger, ZZ-type
CDDcd023358.04E-2753101No hitNo description
PROSITE patternPS0135705582IPR000433Zinc finger, ZZ-type
SuperFamilySSF466896.88E-13106159IPR009057Homeodomain-like
PROSITE profilePS5129322.387108160IPR017884SANT domain
SMARTSM007176.0E-12109158IPR001005SANT/Myb domain
PfamPF002491.1E-12112153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-9113155IPR009057Homeodomain-like
CDDcd001673.62E-12113153No hitNo description
SuperFamilySSF466891.79E-16482559IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009409Biological Processresponse to cold
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MGRSRTVSRS TEDDLNQSRS KRKRTAYGGV ENLELPPSGV GQVANEAKGP ALYHCNYCNK  60
DISGMVRIKC AVCPDFDLCV ECFSVGAEVT PHKGNHPYRV MDNLSFPLIC PDWNADEEIL  120
LLEGIEMYGF GNWTEVAEHV GTKSKSQCID HYNAIYMNSP CFPLPDLSHV MGKSREELVA  180
MAKGNGQVRK EFTAHGEHTL KEESSVAAKV KYDAPRKDDP AYQSSSSLTG EAHIDSSSGN  240
SFQGSGKKTN LAQSKDGIKL EEPQADRSIG EKKLRVSTDE EPSMTELSGY NFKRQEFEIE  300
YDNDAEQLLA DMEFKDTDTK PEHELKLRVL HIYSTRLDER KRRKDFILER NLLYPDPFER  360
NLSPEEKEIY QRYKVFMRFH SKEEHEELLK SVIEEHRIVK RIQDLQEARA AGCRTAAEAN  420
KFIEQKRKKE AEENAQRLRE SVQAGPSGKV LLHGSPQGVM RGSTSLQTIS KESSTVIGGA  480
TTLDDWDITG FIGADLLSDT KKLCSEIRIL PSHYLSMLQT LSVEIMKGNI GKKSDAHNLF  540
KVEPSKVDRV YDMLVKKGIA QA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E4e-38491681120Transcriptional adapter 2
6cw3_G4e-38491681120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971760.10.0PREDICTED: transcriptional adapter ADA2a isoform X1
RefseqXP_017971761.10.0PREDICTED: transcriptional adapter ADA2a isoform X1
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A061E9Q00.0A0A061E9Q0_THECC; Transcriptional adapter
STRINGEOY013670.0(Theobroma cacao)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]