PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011279t1

Common Name

TCM_011279

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HSF

Protein Properties

Length: 421aa MW: 48102.1 Da PI: 4.6403

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011279t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.1	1.9e-35	35	127	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Flkk ye+++de+++++isws+n++sf+++d++ef+ ++LpkyFkhsnf+SF+RQLn+YgF+k+++++ weF+++ F +g+k+ll Thecc1EG011279t1 35 FLKKCYEMVDDEATDSVISWSQNSDSFIIWDMTEFSIHLLPKYFKHSNFSSFIRQLNIYGFRKIDTDR---------WEFANDGFVRGQKDLL 118 9**************************************************************999.........************ PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i r+k + Thecc1EG011279t1 119 KNIARRKYS 127 ***9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.2E-36	25	119	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.4E-54	31	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.17E-34	31	124	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.2E-31	35	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.1E-19	35	58	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.1E-19	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	74	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.1E-19	86	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MKAYSKLHAV EQGLSFKISV MVKPSENGSQ SIAPFLKKCY EMVDDEATDS VISWSQNSDS 60 FIIWDMTEFS IHLLPKYFKH SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRGQKDLLKN 120 IARRKYSQGS DQRKSLQQQP PQQLENSVGS CENNENVGLW KEVENLKTDK NALMQELVKL 180 RQHQETADNK MLLLKDRLHG MEKSQQQLLS FLVMAMQSPG FLVQLIQPNE NNWCMAEASN 240 MLEQVPEDGE SVPFDHMIVR YQPPIDGTSK PVLTPMVDSE NPHESDNSSD ATKDFWMNID 300 FVKVLMDESH IPFIPPDLQD DGAWEKLLLA NTFVENNDDG NLDKERPVNS GMEMEVTGSG 360 THLEKSHNFE LILQNMGKSQ NLEIQPLVNE SQLENYQDFE LLTEQMGHLT SKSTKLQGTP 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MKAYSKLHAV EQGLSFKISV MVKPSENGSQ SIAPFLKKCY EMVDDEATDS VISWSQNSDS  60
FIIWDMTEFS IHLLPKYFKH SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRGQKDLLKN  120
IARRKYSQGS DQRKSLQQQP PQQLENSVGS CENNENVGLW KEVENLKTDK NALMQELVKL  180
RQHQETADNK MLLLKDRLHG MEKSQQQLLS FLVMAMQSPG FLVQLIQPNE NNWCMAEASN  240
MLEQVPEDGE SVPFDHMIVR YQPPIDGTSK PVLTPMVDSE NPHESDNSSD ATKDFWMNID  300
FVKVLMDESH IPFIPPDLQD DGAWEKLLLA NTFVENNDDG NLDKERPVNS GMEMEVTGSG  360
THLEKSHNFE LILQNMGKSQ NLEIQPLVNE SQLENYQDFE LLTEQMGHLT SKSTKLQGTP  420
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-25	22	124	16	129	Heat shock factor protein 1
5d5v_B	7e-25	22	124	16	129	Heat shock factor protein 1
5d5v_D	7e-25	22	124	16	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017971105.1	0.0	PREDICTED: heat stress transcription factor A-8
Swissprot	Q9S7U5	1e-114	HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBL	A0A061E9P6	0.0	A0A061E9P6_THECC; Heat shock transcription factor A8, putative
STRING	EOY01363	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7045	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	1e-116	heat shock transcription factor A8

Link Out ? help Back to Top
Phytozome	Thecc1EG011279t1
Entrez Gene	18610036

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]