PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011212t3

Common Name

TCM_011212

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

BBR-BPC

Protein Properties

Length: 283aa MW: 31523.2 Da PI: 10.2867

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011212t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	346.9	4.8e-106	1	282	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80 mddd+ + rn+gyyep+ +k +lglqlmss+aerd+k r+ nl + +++aa+++rd m++ rd+++++ ++k Thecc1EG011212t3 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMAERDTKSfipgRDPNL-MVTPNAAFHPRDcvvseapipMNY-VRDSWISQ--------REK 81 9*9999***99..***************99****.********************.9***........789 PP GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173 ++++l+++ ++++++l++t+ ++sl l++++ + +++e + +e +++++ke kkrq ++ pk++kakk++k Thecc1EG011212t3 82 FFNMLPAT-------APNYGILPETSAAHSLPI-----LQPPPDPSSRNER-VVGRVE-EQSVNKEGVPLKKRQGGAAPKTPKAKKPRK---- 156 *954.......4689******9988.....8888888544443.333444.455666666777799999999999999999.... PP GAGA_bind 174 skkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266 +k+++++ +r+k kks+d+ +ng ++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafk Thecc1EG011212t3 157 PKDNTNSTV--QRVKPAKKSMDIKINGYDMDISGIPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFK 247 333334444..689*************************************************************************** PP GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 k+LekLaae y+++np+DL++hWA+HGtnkfvtir Thecc1EG011212t3 248 KVLEKLAAENYNFNNPIDLRTHWARHGTNKFVTIR 282 ********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	3.3E-114	1	282	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	3.5E-174	1	282	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM AERDTKSFIP GRDPNLMVTP NAAFHPRDCV 60 VSEAPIPMNY VRDSWISQRE KFFNMLPATA PNYGILPETS AAHSLPILQP PPDPSSRNER 120 VVGRVEEQSV NKEGVPLKKR QGGAAPKTPK AKKPRKPKDN TNSTVQRVKP AKKSMDIKIN 180 GYDMDISGIP IPVCSCTGSP QQCYRWGCGG WQSACCTTNV SMYPLPMSTK RRGARIAGRK 240 MSQGAFKKVL EKLAAENYNF NNPIDLRTHW ARHGTNKFVT IR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00253	DAP	Transfer from AT2G01930	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007045434.2	0.0	PREDICTED: protein BASIC PENTACYSTEINE2
Refseq	XP_007045435.2	0.0	PREDICTED: protein BASIC PENTACYSTEINE2
Refseq	XP_007045436.2	0.0	PREDICTED: protein BASIC PENTACYSTEINE2
Swissprot	Q9SKD0	1e-111	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	A0A061E9H4	0.0	A0A061E9H4_THECC; Basic pentacysteine 2 isoform 1
STRING	EOY01266	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-111	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Thecc1EG011212t3
Entrez Gene	18609982

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]