PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011067t3

Common Name

TCM_011067

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ARR-B

Protein Properties

Length: 677aa MW: 73255.7 Da PI: 6.4463

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011067t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.5	3e-28	229	282	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Thecc1EG011067t3 229 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 282 79*****************.******************************8 PP
2	Response_reg	76	1.4e-25	45	153	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl+vdD+ + +++l+q+l++ y +v+++++++ al+ll+e++ +D++l D+ mp+mdG++ll++ e +lp+i++++ g+ + + + ++ Thecc1EG011067t3 45 VLVVDDDITCLRILEQMLRRCLY-IVTTCSQAKVALNLLRERKgcFDVVLSDVYMPDMDGYKLLEHVGLEM-DLPVIMMSTDGKTNAVMKGIR 135 89*******************.***************************************6644.8**************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel + Thecc1EG011067t3 136 HGACDYLIKPIREEELKN 153 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	28	No hit	No description
SuperFamily	SSF52172	6.12E-34	42	168	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	1.1E-40	42	178	No hit	No description
SMART	SM00448	2.7E-29	43	155	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	42.443	44	159	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.8E-22	45	153	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.02E-27	46	158	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.5E-30	226	287	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.898	226	285	IPR017930	Myb domain
SuperFamily	SSF46689	1.7E-19	227	286	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	229	282	IPR006447	Myb domain, plants
Pfam	PF00249	9.8E-7	231	280	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042802	Molecular Function	identical protein binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MATMQRVAQS SVSTSAAATS SYGGSSSCKG PEVVISDQFP VGLRVLVVDD DITCLRILEQ 60 MLRRCLYIVT TCSQAKVALN LLRERKGCFD VVLSDVYMPD MDGYKLLEHV GLEMDLPVIM 120 MSTDGKTNAV MKGIRHGACD YLIKPIREEE LKNIWQHVVR KKWNENKELE HSGSLDDNDR 180 HKRGNDDAEY ASSVNDGADV SLKPQKKRSN TKEEDDGEIE NDDPSASKKP RVVWSVELHQ 240 QFVSAVNQLG IDKAVPKRIL ELMNVPGLTR ENVASHLQKF RLYLKRISGV AQQGGISTSL 300 CGPLEPNVKI GSLGRFDIQA LAASGQIPPQ TLAALNAELL GRPTGNLVTA MDQPALLQAS 360 LQGPKCIPVE HGVAFGQPLV KCQSSISKHF PQSIVSVEDV SSGFGAWPSN NIGTAAPSSG 420 LGGLSSQNGN MLIDLLQQQQ QQRQLQKSQQ QQQSTVPEPS RSINVQPSCL VVPSQSSASF 480 QAGNSTVSVN QNGTFCRTPV IDYSLLSSQS NNSSLNIGQV SDGDLQTTGV LSGYIPPTSL 540 SPSVSSCSLN ADNCTSHQVQ TSSMTFKASR HLPGFVHSMC DVQGPFGVTK SGDVFDQAHF 600 SNLGYFNKEA CLPTRFAADE FQLPMSSSSS RGKVFAENTG TRVKQEPSME FVDNVKVGIP 660 MLQQFPPNDL MSVFTE*

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MATMQRVAQS SVSTSAAATS SYGGSSSCKG PEVVISDQFP VGLRVLVVDD DITCLRILEQ  60
MLRRCLYIVT TCSQAKVALN LLRERKGCFD VVLSDVYMPD MDGYKLLEHV GLEMDLPVIM  120
MSTDGKTNAV MKGIRHGACD YLIKPIREEE LKNIWQHVVR KKWNENKELE HSGSLDDNDR  180
HKRGNDDAEY ASSVNDGADV SLKPQKKRSN TKEEDDGEIE NDDPSASKKP RVVWSVELHQ  240
QFVSAVNQLG IDKAVPKRIL ELMNVPGLTR ENVASHLQKF RLYLKRISGV AQQGGISTSL  300
CGPLEPNVKI GSLGRFDIQA LAASGQIPPQ TLAALNAELL GRPTGNLVTA MDQPALLQAS  360
LQGPKCIPVE HGVAFGQPLV KCQSSISKHF PQSIVSVEDV SSGFGAWPSN NIGTAAPSSG  420
LGGLSSQNGN MLIDLLQQQQ QQRQLQKSQQ QQQSTVPEPS RSINVQPSCL VVPSQSSASF  480
QAGNSTVSVN QNGTFCRTPV IDYSLLSSQS NNSSLNIGQV SDGDLQTTGV LSGYIPPTSL  540
SPSVSSCSLN ADNCTSHQVQ TSSMTFKASR HLPGFVHSMC DVQGPFGVTK SGDVFDQAHF  600
SNLGYFNKEA CLPTRFAADE FQLPMSSSSS RGKVFAENTG TRVKQEPSME FVDNVKVGIP  660
MLQQFPPNDL MSVFTE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	7e-24	225	288	1	64	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007045293.2	0.0	PREDICTED: two-component response regulator ORR21
Swissprot	A2XE31	1e-168	ORR21_ORYSI; Two-component response regulator ORR21
Swissprot	Q8H7S7	1e-168	ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBL	A0A061E805	0.0	A0A061E805_THECC; Two-component response regulator
STRING	EOY01124	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-121	response regulator 2

Link Out ? help Back to Top
Phytozome	Thecc1EG011067t3
Entrez Gene	18609890

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]