PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG010778t1
Common NameTCM_010778
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 302aa    MW: 33264.2 Da    PI: 6.259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG010778t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.8e-171562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg WT+ Ed++l +++k +G g W++I++  g++R++k+c++rw++yl
  Thecc1EG010778t1 15 RGTWTATEDKILTEYIKAHGEGKWRSIPKAAGLKRCGKSCRLRWLNYL 62
                      89********************************************97 PP

2Myb_DNA-binding50.35.3e-1668112147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++
  Thecc1EG010778t1  68 RGNITRDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSV 112
                       7899******************.*********.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23765IPR009057Homeodomain-like
PROSITE profilePS5129416.8961062IPR017930Myb domain
SuperFamilySSF466893.56E-2913109IPR009057Homeodomain-like
SMARTSM007175.8E-141464IPR001005SANT/Myb domain
PfamPF002492.7E-151562IPR001005SANT/Myb domain
CDDcd001671.65E-101762No hitNo description
PROSITE profilePS5129425.31463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2466116IPR009057Homeodomain-like
SMARTSM007171.1E-1567115IPR001005SANT/Myb domain
PfamPF002493.0E-1468113IPR001005SANT/Myb domain
CDDcd001678.80E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRKPCCSQE EGLNRGTWTA TEDKILTEYI KAHGEGKWRS IPKAAGLKRC GKSCRLRWLN  60
YLRPDIKRGN ITRDEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SVLSKRAQVK  120
EFDHTNKDEK KQRSISCSRK APTSSGVIHA KAGRCTKVSF SPQQEVTGED DNNTIVRTAP  180
SMDVELAHDA AVASGSSDGS FTLLSSKEEN PCISRFAMDF DIGESSISEA LASHFSQLSD  240
FDFCDINTVI YEYGTKDNGQ ALVSPEGMVG NWSGNGLVDA NLDSDFGFLA GFLESDGDLT  300
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045022.20.0PREDICTED: transcription factor TT2
TrEMBLA0A061EEZ80.0A0A061EEZ8_THECC; Myb domain protein 4, putative
STRINGEOY008540.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-59MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]