PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG010778t1 | ||||||||
Common Name | TCM_010778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 33264.2 Da PI: 6.259 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.8e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed++l +++k +G g W++I++ g++R++k+c++rw++yl Thecc1EG010778t1 15 RGTWTATEDKILTEYIKAHGEGKWRSIPKAAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.3e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++ Thecc1EG010778t1 68 RGNITRDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSV 112 7899******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.896 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.314 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-24 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.80E-12 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGRKPCCSQE EGLNRGTWTA TEDKILTEYI KAHGEGKWRS IPKAAGLKRC GKSCRLRWLN 60 YLRPDIKRGN ITRDEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SVLSKRAQVK 120 EFDHTNKDEK KQRSISCSRK APTSSGVIHA KAGRCTKVSF SPQQEVTGED DNNTIVRTAP 180 SMDVELAHDA AVASGSSDGS FTLLSSKEEN PCISRFAMDF DIGESSISEA LASHFSQLSD 240 FDFCDINTVI YEYGTKDNGQ ALVSPEGMVG NWSGNGLVDA NLDSDFGFLA GFLESDGDLT 300 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007045022.2 | 0.0 | PREDICTED: transcription factor TT2 | ||||
TrEMBL | A0A061EEZ8 | 0.0 | A0A061EEZ8_THECC; Myb domain protein 4, putative | ||||
STRING | EOY00854 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-59 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG010778t1 |
Entrez Gene | 18609709 |
Publications ? help Back to Top | |||
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