PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG010701t3
Common NameTCM_010701
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARR-B
Protein Properties Length: 518aa    MW: 57947.4 Da    PI: 4.9127
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG010701t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.13e-21200250152
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                       k+r++Wt +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQ 
  Thecc1EG010701t3 200 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQN 250
                       68*******************.9****************************5 PP
2Response_reg81.33.2e-27201281109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ +++l+++l+k  y ev+++  +++al ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++
  Thecc1EG010701t3  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQ 110
                       89*********************.***************999999**********************6644.8******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ ++el++
  Thecc1EG010701t3 111 HGACDYLLKPIRMKELRN 128
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-3517140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-4417167No hitNo description
SMARTSM004486.9E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.14319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.55E-2921134No hitNo description
Gene3DG3DSA:1.10.10.601.9E-23198251IPR009057Homeodomain-like
SuperFamilySSF466892.51E-14198253IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-19200250IPR006447Myb domain, plants
PfamPF002494.5E-7202250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0016310Biological Processphosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016301Molecular Functionkinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MVESGFSSPR HDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA RDALSLLRER  60
KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKKIHE VRDIESLEGN EGLQMTRSGS DLVDDGHLLS GEDMNSARKR  180
KDAENKHDDR DLSDPSSTKK ARVVWTVDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT  240
RENVASHLQN VDLNHEGDKK GITSAPVAEP KGALSIDIPD PHKAQSSQIS FDHSLGSVDS  300
GLKFALFNST NQTRYSWSEI PEIQFKQECE PLQLENGFSQ LPLPGSQHQV QTEYLQPAAS  360
ISSGPSITEK EVSSRPLYDE YRSNHVKHLS PTEAVDLFPV PSRNQTLNNQ VFNPISATTS  420
SMKNQGISLN DLEFAQRNLN GGVGVPIASL SEDLQFCWLQ GECYAMNIGL QDFECIEYND  480
PAPIAEIPFL LYDAPRFDHE HLFDPTEYAA IDQGLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15196249154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044951.20.0PREDICTED: two-component response regulator ORR26 isoform X2
SwissprotQ5N6V81e-132ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A061E8300.0A0A061E830_THECC; Two-component sensor histidine kinase bacteria, putative isoform 3
STRINGGorai.005G173300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-127response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]