PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG010701t1 | ||||||||
Common Name | TCM_010701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ARR-B | ||||||||
Protein Properties | Length: 582aa MW: 65118.3 Da PI: 5.0595 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 78.5 | 8.4e-25 | 200 | 253 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl Thecc1EG010701t1 200 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 81 | 3.9e-27 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl+vdD+p+ +++l+++l+k y ev+++ +++al ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ Thecc1EG010701t1 20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQ 110 89*********************.***************999999**********************6644.8******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ ++el++ Thecc1EG010701t1 111 HGACDYLLKPIRMKELRN 128 ***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-44 | 17 | 164 | No hit | No description |
SuperFamily | SSF52172 | 3.13E-35 | 17 | 140 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 6.9E-32 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.143 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.3E-24 | 20 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.29E-29 | 21 | 134 | No hit | No description |
SuperFamily | SSF46689 | 5.29E-18 | 198 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 198 | 258 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-22 | 200 | 253 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.9E-8 | 202 | 252 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0016310 | Biological Process | phosphorylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016301 | Molecular Function | kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MVESGFSSPR HDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA RDALSLLRER 60 KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP 120 IRMKELRNIW QHVFRKKIHE VRDIESLEGN EGLQMTRSGS DLVDDGHLLS GEDMNSARKR 180 KDAENKHDDR DLSDPSSTKK ARVVWTVDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT 240 RENVASHLQK YRLYLSRLQK DSDVKNSFVG MKHSDPPSKD STDCFGIHSS MSVIQDDVSN 300 GTYNFSVNNS LVQNVDLNHE GDKKGITSAP VAEPKGALSI DIPDPHKAQS SQISFDHSLG 360 SVDSGLKFAL FNSTNQTRYS WSEIPEIQFK QECEPLQLEN GFSQLPLPGS QHQVQTEYLQ 420 PAASISSGPS ITEKEVSSRP LYDEYRSNHV KHLSPTEAVD LFPVPSRNQT LNNQVFNPIS 480 ATTSSMKNQG ISLNDLEFAQ RNLNGGVGVP IASLSEDLQF CWLQGECYAM NIGLQDFECI 540 EYNDPAPIAE IPFLLYDAPR FDHEHLFDPT EYAAIDQGLF A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-18 | 196 | 258 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007044949.2 | 0.0 | PREDICTED: two-component response regulator ARR11 isoform X1 | ||||
TrEMBL | A0A061E748 | 0.0 | A0A061E748_THECC; Two-component sensor histidine kinase bacteria, putative isoform 1 | ||||
STRING | EOY00781 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8066 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-147 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG010701t1 |
Entrez Gene | 18609658 |
Publications ? help Back to Top | |||
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