PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG010411t1 | ||||||||
Common Name | TCM_010411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | YABBY | ||||||||
Protein Properties | Length: 246aa MW: 27321.1 Da PI: 7.502 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 209.9 | 8.9e-65 | 6 | 175 | 2 | 166 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekee 90 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhC+sllsvn++kas qlla+ l+++ +e +e ee + +++ Thecc1EG010411t1 6 HLFDLPEQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCSSLLSVNMMKASfvplQLLAS---LGHDHDDEPKEGAVCEEVAA----PRKT 91 7899*********************************************9998433333333...33333333333333333222....2222 PP YABBY 91 sastsvssekl...senedeevprvpp.virPPekrqrvPsaynrfik......eeiqrikasnPdishreafsaaaknWahfPki 166 +a++ +s l s+ne+e++ rv p v++PPekrqr+Psaynrfik eei+r+ka+nP+i h+eafs+aaknWahfP++ Thecc1EG010411t1 92 AAHRRSPS--LmtsSDNEEEDIVRVNPtVNKPPEKRQRAPSAYNRFIKlipggrEEIRRLKAQNPNIPHKEAFSTAAKNWAHFPPM 175 22222222..22348999999***9888*******************8888888******************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.3E-60 | 11 | 176 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.35E-5 | 117 | 174 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSTLNHLFDL PEQICYVQCG FCTTILLVSV PCSSLSMVVT VRCGHCSSLL SVNMMKASFV 60 PLQLLASLGH DHDDEPKEGA VCEEVAAPRK TAAHRRSPSL MTSSDNEEED IVRVNPTVNK 120 PPEKRQRAPS AYNRFIKLIP GGREEIRRLK AQNPNIPHKE AFSTAAKNWA HFPPMDTKGD 180 GESCGLDEGQ ALWNSDATQV LHVSRFDGKN KFTYKAMLSV KEKPQGVPYG PRHRLREDAL 240 DIDFY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970074.1 | 1e-140 | PREDICTED: axial regulator YABBY 4 isoform X1 | ||||
Refseq | XP_017970075.1 | 1e-140 | PREDICTED: axial regulator YABBY 4 isoform X2 | ||||
Swissprot | Q9LDT3 | 6e-70 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A061E686 | 0.0 | A0A061E686_THECC; Plant-specific transcription factor YABBY family protein | ||||
STRING | EOY00530 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8044 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 3e-72 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG010411t1 |
Entrez Gene | 18609499 |
Publications ? help Back to Top | |||
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