PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG010375t1
Common NameTCM_010375
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 420aa    MW: 47228.8 Da    PI: 9.8908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG010375t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-10251293754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         Er+RR++i++++++Lr l+Pk +      K++  +iL  ++eYI  L
  Thecc1EG010375t1 251 VTERNRRKKIKDGLFKLRALVPKiS------KVDRTTILIDVIEYIGTL 293
                       57*********************66......***************766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.50E-7242290No hitNo description
SuperFamilySSF474593.01E-12243308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.43244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-9250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12251309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8252293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MLGTPLLSVS FPFGGYKIAR NILICDSEIR IHGEVAMSNQ LKWVNHANAS GSRSSHDTMG  60
TQVLISVLGS LIELSISKHV RFFGLFSCQY FAISKHHRVS NNSIQCTLAP EVMTADSYAK  120
ANVDKWYLKT FGKDLHNLPF PISLSTFIPR IQAIPLVSDS NSQPSLDGSS SGSNPLIEHP  180
PFALGSAYIS QYEQLKQLIG TYHGTKRLRC SKNVFEQEAG FIVDRKNKTV KDIMRTTKHL  240
GKKNYHSKNL VTERNRRKKI KDGLFKLRAL VPKISKVDRT TILIDVIEYI GTLLEEEKKL  300
QEELRKIEEE DCKKSNAELK CAKLDRLHKD NMSAVTSGLA KMAKDKVHVE VNQITKREFL  360
IKLCYELKQG GFAKLMEGID SLGLQVIDAN VTTFNGKVLN IFKVEVRLSR WLTSIEIEC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970458.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH90
TrEMBLA0A061EDX10.0A0A061EDX1_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY004940.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.15e-23bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]