PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG010360t1 | ||||||||
Common Name | TCM_010360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 24334.7 Da PI: 9.7039 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.6e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l d+++ +G g+W++I++ ++R++k+c++rw++yl Thecc1EG010360t1 11 KGLWTEEEDKILSDYIRVHGRGHWNRISKVTALKRCGKSCRLRWLNYL 58 678*****************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 60.7 | 3.1e-19 | 66 | 109 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++eEd+l+++++++lG++ W++Iar+++ gRt++q+k++w+++l Thecc1EG010360t1 66 HFSEEEDDLIIRLHNLLGNR-WSLIARRVP-GRTDNQVKNHWNTHL 109 69******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.901 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-30 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-22 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.17E-11 | 14 | 58 | No hit | No description |
PROSITE profile | PS51294 | 26.973 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-18 | 65 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 66 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.60E-14 | 67 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MKGLENEHYR KGLWTEEEDK ILSDYIRVHG RGHWNRISKV TALKRCGKSC RLRWLNYLNP 60 DIKLGHFSEE EDDLIIRLHN LLGNRWSLIA RRVPGRTDNQ VKNHWNTHLC KKLGIKKPRG 120 KVVCSMRKIS SPTAETKTVS TDNFNFKPLQ SSRITMSVDC PINTSETSNH GVETHQFIDD 180 QHCIQSFLSA GNSFKMNSPG FLEFLDGFFY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 11 | 113 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007044644.2 | 1e-153 | PREDICTED: transcription factor WER | ||||
Swissprot | Q9SEI0 | 2e-62 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A061E669 | 1e-156 | A0A061E669_THECC; Myb domain protein 66, putative | ||||
STRING | EOY00476 | 1e-157 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 9e-65 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG010360t1 |
Entrez Gene | 18609462 |