PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG009642t1
Common NameTCM_009642
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 318aa    MW: 36068.3 Da    PI: 6.6224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG009642t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-172471148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd ll ++++++G g+W+  a++ g++Rt+k+c++rw++yl
  Thecc1EG009642t1 24 RGPWTLEEDTLLTHYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 71
                      89********************************************97 PP
2Myb_DNA-binding52.51.1e-1677120146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Thecc1EG009642t1  77 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.331971IPR017930Myb domain
SuperFamilySSF466895.62E-3122118IPR009057Homeodomain-like
SMARTSM007175.8E-152373IPR001005SANT/Myb domain
PfamPF002491.1E-152471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-232578IPR009057Homeodomain-like
CDDcd001671.61E-112671No hitNo description
PROSITE patternPS0017503948IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.75172126IPR017930Myb domain
SMARTSM007172.7E-1576124IPR001005SANT/Myb domain
PfamPF002491.1E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2379125IPR009057Homeodomain-like
CDDcd001671.28E-1181120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRSAMPPATK GMCTPSEDDS ELRRGPWTLE EDTLLTHYIA RHGEGRWNML AKCAGLKRTG  60
KSCRLRWLNY LKPDIKRGNL TPQEQLLILE LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKQARQLN IESNSKKFLE AVRCFWMPRL RQKVEQTSSS SSLKEMSSQS SAPSDQLSDC  180
AIPSLSTFSP LPNKITDRSN HSFENSSSVT TQSLYPTDFI NISEQTEIPE HLTSPNVYGH  240
TTVYNNNQIV NASYNIDSSG YDIEGFSLAS MSAVGSYEGS PSECQMGEGN WICNEMTDTL  300
WNLDDIWQFR ELGELAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-252112624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044287.20.0PREDICTED: myb-related protein 305
SwissprotQ9C9G78e-95MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A061ECW50.0A0A061ECW5_THECC; Myb domain protein 62, putative
STRINGEOY001190.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-94myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]