PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG009387t1

Common Name

TCM_009387

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ARR-B

Protein Properties

Length: 331aa MW: 37261.8 Da PI: 10.2973

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG009387t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	57.8	2.4e-18	265	313	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 rl+W+peLH +F a++ L G e+A Pk+il++m+ + Lt +v+SHLQ Thecc1EG009387t1 265 LRLVWNPELHYKFTAALSAL-GDENARPKSILQMMNEPTLTHRQVASHLQ 313 69****************.9************************** PP
2	Response_reg	47.6	8.8e-17	18	123	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 +l+vd + + ++ l+++le+ y +v+++ ++ a+ ++++ + + l++ i+m + + l +l+ + +++ +p+iv++++ + + a++a+ Thecc1EG009387t1 18 ILLVDHDTTSLMYLATMLERYSY-KVTTTVLPSVAVSMIQQGNnsFKLVMANINMKDKNSLSFLRALLKKD--IPVIVMSSERSANVAQKAIA 107 89*******************.***********999999******************8877..**************** PP TTESEEEESS--HHHH CS Response_reg 92 aGakdflsKpfdpeel 107 +Ga+ +l Kp++ ++l Thecc1EG009387t1 108 YGASLHLQKPISVNDL 123 *********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	4.27E-21	15	133	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	3.8E-22	15	138	No hit	No description
SMART	SM00448	5.8E-11	16	127	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	28.714	17	131	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.5E-13	18	124	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	4.90E-16	19	124	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-17	263	313	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-12	263	314	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-15	264	314	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MKESSRSNIP RCSRGLPILL VDHDTTSLMY LATMLERYSY KVTTTVLPSV AVSMIQQGNN 60 SFKLVMANIN MKDKNSLSFL RALLKKDIPV IVMSSERSAN VAQKAIAYGA SLHLQKPISV 120 NDLKYLWQHA YRNVKNQAIK IKEVATQSKP SVPRNGHFIG IDETNDPKGK NKEVAETDVR 180 ILKTNCGMEL KKTPIEHMLA KQNLEHGETS SKSRKSYADK EDKTENKRNK PNPELADFGK 240 AETAKQEGWK DKTSNQSSSP KGKKLRLVWN PELHYKFTAA LSALGDENAR PKSILQMMNE 300 PTLTHRQVAS HLQDLSIKPW YSQSFTISYM *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021299376.1	0.0	two-component response regulator ARR1-like
TrEMBL	A0A061E4X0	0.0	A0A061E4X0_THECC; Pseudo-response regulator 6-like protein
STRING	EOY00026	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20051	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	3e-41	pseudo-response regulator 6

Link Out ? help Back to Top
Phytozome	Thecc1EG009387t1
Entrez Gene	18609136

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]