PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG009365t3

Common Name

TCM_009365

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 304aa MW: 33698 Da PI: 7.5609

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG009365t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.7	5.2e-15	224	249	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg Thecc1EG009365t3 224 FKTELCNKWQETGACPYGDHCQFAHG 249 79***********************8 PP
2	zf-CCCH	18.7	3e-06	262	286	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H Thecc1EG009365t3 262 YKTEVCRMVLAGDVCPYGHRCHFRH 286 9********55********88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.9E-19	218	256	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-11	220	255	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.286	223	251	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.7E-9	223	250	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-12	224	249	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.26E-8	257	292	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-12	257	290	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-4	261	288	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.821	261	289	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MQNDKGSAVY GDLAAKQSHD LQSDDIYSSS TTSSSAATAS LFGLYHPRLL MQQHQDMINR 60 HNLCLTRLRD AAKEAEALRH ENTALRSVNR DLNKQLSALI QASVQNHFAS SDYNTTPFEL 120 VNALRGLCLG DGGVGEEEVC DESPTSVMEG AVDVERVMLP KSISVRSNGY LKMMSQAGAS 180 HRGKTRGPTR PGNATQLSGA KVYVQGGKKE EEPLELEVYN QGMFKTELCN KWQETGACPY 240 GDHCQFAHGI EELRPVIRHP RYKTEVCRMV LAGDVCPYGH RCHFRHALTE QEKFMGQLKP 300 RTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1rgo_A	6e-22	224	290	4	70	Butyrate response factor 2
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00383	ampDAP	Transfer from AT1G68200	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577460	1e-73	JX577460.1 Gossypium hirsutum clone NBRI_GE9285 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970182.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 15 isoform X3
Swissprot	Q9C9F5	4e-91	C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A061E4R1	0.0	A0A061E4R1_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 3
STRING	EOY00014	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	1e-88	C3H family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG009365t3
Entrez Gene	18609129

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]