PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG009365t2
Common NameTCM_009365
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 309aa    MW: 34266.6 Da    PI: 7.5609
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG009365t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.75.3e-15229254126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +ktelC+ +++tG C+yGd C+FaHg
  Thecc1EG009365t2 229 FKTELCNKWQETGACPYGDHCQFAHG 254
                       79***********************8 PP
2zf-CCCH18.73.1e-06267291125
                       --S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                       ykte Cr  +++  C+yG rC+F H
  Thecc1EG009365t2 267 YKTEVCRMVLAGDVCPYGHRCHFRH 291
                       9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-19223261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-11225260IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-9228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286228256IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-12229254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-8262297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-12262295IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4266293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821266294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQNDKGSAVY GDLAAKQSHD LQSDDIYSSS TTSSSAATAS LFGLYHPRLL MQQHQDMINR  60
HNLCLTRLRD AAKEAEALRH ENTALRSVNR DLNKQLSALI QASVQNHFAS SDYNTTPFEL  120
VNALRGLCLG DGGVGEEEVC DESPTSVMEG AVDVERVMLP KSISVRSNGY LKMMSQAGAS  180
HRGKTRGPTR PGNATQLSGA VNVQQKVYVQ GGKKEEEPLE LEVYNQGMFK TELCNKWQET  240
GACPYGDHCQ FAHGIEELRP VIRHPRYKTE VCRMVLAGDV CPYGHRCHFR HALTEQEKFM  300
GQLKPRTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22229295470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5774601e-82JX577460.1 Gossypium hirsutum clone NBRI_GE9285 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044182.20.0PREDICTED: zinc finger CCCH domain-containing protein 15 isoform X1
RefseqXP_017970179.10.0PREDICTED: zinc finger CCCH domain-containing protein 15 isoform X1
RefseqXP_017970180.10.0PREDICTED: zinc finger CCCH domain-containing protein 15 isoform X1
SwissprotQ9C9F58e-92C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A061ECI90.0A0A061ECI9_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1
STRINGEOY000140.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-87C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]