PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008772t1
Common NameTCM_008772
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family SBP
Protein Properties Length: 481aa    MW: 52799.9 Da    PI: 8.0761
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008772t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41188264278
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  Thecc1EG008772t1 188 CQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 264
                       **************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-33181249IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.035185262IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.06E-39186267IPR004333Transcription factor, SBP-box
PfamPF031104.5E-32188261IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSSISLMEWN AKTPLQWDWE NLMMFNSTPT EIPRKLRPIE WDIDGEGGMD SGSLYSSGAA  60
GGSGGSGSDL GLASLSKSSK SVSINSSSMG ETKVTKFTLE AFEASPDDIS NKKEVSKVEP  120
TGTSPTLEAS VGSGEPLLSL KLGKRTYFED VCAGSNAKIS SCSATPAPSP TTAKRSKPNC  180
QSTHVPHCQV EGCNLDLSSA KDYHRKHRVC ESHSKSPKVI VGGLERRFCQ QCSRFHGLSE  240
FDEKKRSCRR RLSDHNARRR KPQTEAVHFN AARLSSSSYD GKPQMGFVWN KVPFLHARPN  300
EGFTWEGTFD SKSSHMKGFT PTKVGNDNGQ LQLPGNQLLN SITMRCQDSN RFLPTKGKDN  360
TAEVLNQGVE EPTLTSKMGT TQDFHRALSL LSNDSWISCE PKHGSLAYSM HANPTSMSQP  420
VMNVISQGFP RALSENWQME QQTTESQVQA TLHGDADNRF QEFQLLKAPY DGGFYSNQMN  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271882611184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243260KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043987.20.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017971020.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017971021.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017971022.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017971023.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017971024.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017971025.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017971026.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A061EC140.0A0A061EC14_THECC; Squamosa promoter binding protein-like 2, putative isoform 1
STRINGEOX998170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.38e-92squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]