PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG008772t1 | ||||||||
Common Name | TCM_008772 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | SBP | ||||||||
Protein Properties | Length: 481aa MW: 52799.9 Da PI: 8.0761 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.7 | 1.2e-41 | 188 | 264 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+ Thecc1EG008772t1 188 CQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 264 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-33 | 181 | 249 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 33.035 | 185 | 262 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.06E-39 | 186 | 267 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.5E-32 | 188 | 261 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MSSISLMEWN AKTPLQWDWE NLMMFNSTPT EIPRKLRPIE WDIDGEGGMD SGSLYSSGAA 60 GGSGGSGSDL GLASLSKSSK SVSINSSSMG ETKVTKFTLE AFEASPDDIS NKKEVSKVEP 120 TGTSPTLEAS VGSGEPLLSL KLGKRTYFED VCAGSNAKIS SCSATPAPSP TTAKRSKPNC 180 QSTHVPHCQV EGCNLDLSSA KDYHRKHRVC ESHSKSPKVI VGGLERRFCQ QCSRFHGLSE 240 FDEKKRSCRR RLSDHNARRR KPQTEAVHFN AARLSSSSYD GKPQMGFVWN KVPFLHARPN 300 EGFTWEGTFD SKSSHMKGFT PTKVGNDNGQ LQLPGNQLLN SITMRCQDSN RFLPTKGKDN 360 TAEVLNQGVE EPTLTSKMGT TQDFHRALSL LSNDSWISCE PKHGSLAYSM HANPTSMSQP 420 VMNVISQGFP RALSENWQME QQTTESQVQA TLHGDADNRF QEFQLLKAPY DGGFYSNQMN 480 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-27 | 188 | 261 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 260 | KKRSCRRRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007043987.2 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_017971020.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_017971021.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_017971022.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_017971023.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_017971024.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_017971025.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_017971026.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A061EC14 | 0.0 | A0A061EC14_THECC; Squamosa promoter binding protein-like 2, putative isoform 1 | ||||
STRING | EOX99817 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6562 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 8e-92 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG008772t1 |
Entrez Gene | 18608985 |
Publications ? help Back to Top | |||
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