PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008731t1
Common NameTCM_008731
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CAMTA
Protein Properties Length: 988aa    MW: 108883 Da    PI: 5.4534
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008731t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.22.1e-55151294117
              CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                       e ++rwlk+ e+  iL+n+ek+elt+e++++p+ gsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ve+l+cyYah+ +np+fq
  Thecc1EG008731t1  15 EaQARWLKPAEVFFILQNHEKYELTQEPPQKPTGGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGAQNPNFQ 107
                       4499***************************************************************************************** PP

              CG-1  96 rrcywlLeeelekivlvhylev 117
                       rr+yw+Le ++e+ivlvhy+e 
  Thecc1EG008731t1 108 RRSYWMLEPAYEHIVLVHYREI 129
                       *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9199135IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7512130IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-4715128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.5E-8420509IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.08E-17423506IPR014756Immunoglobulin E-set
CDDcd001023.00E-5423507No hitNo description
PfamPF018331.3E-7423506IPR002909IPT domain
CDDcd002041.90E-15608711No hitNo description
Gene3DG3DSA:1.25.40.206.1E-16612711IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.68619711IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.51E-16621713IPR020683Ankyrin repeat-containing domain
PfamPF127963.4E-8625712IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0015652681IPR002110Ankyrin repeat
PROSITE profilePS5008811.167652684IPR002110Ankyrin repeat
SMARTSM002481100691720IPR002110Ankyrin repeat
SMARTSM0001526769791IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.455770799IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.58E-8809879IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.9827849IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078828857IPR000048IQ motif, EF-hand binding site
PfamPF006120.025830848IPR000048IQ motif, EF-hand binding site
SMARTSM000151.9E-4850872IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.011851875IPR000048IQ motif, EF-hand binding site
PfamPF006123.8E-5853872IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MSIISEYDIN NLFREAQARW LKPAEVFFIL QNHEKYELTQ EPPQKPTGGS LFLFNKRVLR  60
FFRKDGHSWR KKKDGRTVGE AHERLKVGNV ETLNCYYAHG AQNPNFQRRS YWMLEPAYEH  120
IVLVHYREIN EAKPSSASIV QSPVSSSGFS LSPNSYTSQN PGSNSLASDV HEPYQNSSSP  180
GSVEVSSDIV IKNNGIDNAV EFASSADLQV SEALKRLEEQ LSLNEDSFKE MSPLCCLDGD  240
TNDSRFLEYG REITKQELQA GLLYEPNDIV QDHLYSQHPR VENYSNSFGL LPDGGKNGQN  300
SQVYVSDSSD GSKESLYWKN VFDSCKTQSG VDSQGKPLTS SRTGPASQQE ESRWLNINGS  360
NIGDSSVLLH QEVENDIIPS YSSAIEGVDT NSDYYAMLFN QDGIGVPLAA DSSLTVAQKQ  420
KFTIAEVSPE WGYSSEATKV IIVGSFLCDP LESAWACMFG ETEVPLEIIQ EGVICCKAPP  480
HLPGKVTLCI TSGNRESCSE VREFEYIANT NSCAQCNLSH KEANRSPEEL LLLVRFVQLL  540
LSDSLQKDSI ESGIYLRSKF KADDDSWSHV IEALLVGSGT SSGTVDWLLE ELLKDKLQQW  600
LCSRSKGAVD QSGCTMSKKE QGIIHMAAGL GFEWALTPIL NHGVGINFRD INGWTALHWA  660
ARIGREKMVA ALIASGASAG AVTDPTSQDP SGKTAAFIAA SSGNKGLAGY LSELALTSHL  720
SSLTLEESEL SKGSAAVQAE MAVNSVSKGS LATGEDQLSL KDTLAAVRNA AQAAARIQNA  780
FRAHSFRKRQ QKEAVATAAS VDEYGISSDE IQGLSTLSKL AFGNARDYNS AALSIQKKFR  840
GWKGRKDFLA LRQKVVKIQA HVRGYQVRKN YKVICWAVGV LDKVVLRWRR KGVGLRGFRS  900
EPESIDESED EDILKVFRKQ KVDVAVDEAV SRVLSMVDSP DARQQYRRML ERYRQAKADL  960
VNTNEPAAST SIGDTYDMES DESFQFP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970953.10.0PREDICTED: calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A061EBZ70.0A0A061EBZ7_THECC; Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains isoform 1
STRINGEOX997930.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]