PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG008671t2 | ||||||||
Common Name | TCM_008671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | SBP | ||||||||
Protein Properties | Length: 246aa MW: 26723.5 Da PI: 8.9769 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 48.4 | 2.6e-15 | 5 | 35 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh+l efDe+krsCr+rL++hn+rrrk+q+ Thecc1EG008671t2 5 RFHSLVEFDEGKRSCRKRLDGHNRRRRKPQP 35 9***************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 14.323 | 1 | 33 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.8E-8 | 5 | 32 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 4.5E-4 | 5 | 20 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.92E-12 | 5 | 38 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MHYIRFHSLV EFDEGKRSCR KRLDGHNRRR RKPQPDSLSV NSGRFLSNHQ GTRYLPFSNH 60 QIFSATAVTS SWVGSVKVET DIKSELNFSS RNSLFRGSSS QNCKEEKHFS FLQSTSLSLP 120 GVSVCQPFLD ANPLSGNGGS SRKIFSNGLN QVINSNRALS LLSSQPAETG EIGLSPCPMV 180 QSGPASSLNQ NLHYNGLGME GEQVGSILAS DGSSNTNFHG NEMFQTGHPG SSSSGTHHTL 240 SFSWE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 32 | KRSCRKRLDGHNRRRRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970620.1 | 1e-172 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_017970621.1 | 1e-172 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A061E583 | 1e-178 | A0A061E583_THECC; Squamosa promoter-binding protein transcription factor family protein, putative isoform 2 | ||||
STRING | EOX99771 | 1e-173 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-18 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG008671t2 |
Entrez Gene | 18608951 |
Publications ? help Back to Top | |||
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