PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008462t1

Common Name

TCM_008462

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 133aa MW: 14775.9 Da PI: 9.0812

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008462t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	67.1	4.1e-21	5	53	1	49
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 +CaaCk+lrrkC +dCv++pyfp+++ ++fa +hk+FGasnv kll++ Thecc1EG008462t1 5 RCAACKYLRRKCHSDCVFSPYFPSNNLQRFASIHKIFGASNVAKLLQHN 53 6*********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.33	4	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-20	5	52	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MNPGRCAACK YLRRKCHSDC VFSPYFPSNN LQRFASIHKI FGASNVAKLL QHNVELKPVN 60 GCVGLMFLLQ QQIHNAETQL AKIRAEIAVL KSNAHHSQIQ QFEDESDSNV FLPGRHSVAH 120 PGLFNQASFG FI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-22	6	87	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-22	6	87	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021284852.1	3e-65	LOB domain-containing protein 24-like
Refseq	XP_021284859.1	3e-65	LOB domain-containing protein 24-like
Refseq	XP_021284866.1	3e-65	LOB domain-containing protein 24-like
Refseq	XP_021284877.1	3e-65	LOB domain-containing protein 24-like
Swissprot	P59467	2e-33	LBD23_ARATH; LOB domain-containing protein 23
TrEMBL	A0A061E5V7	7e-93	A0A061E5V7_THECC; LOB domain-containing protein 23, putative
STRING	EOX99696	1e-93	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	1e-35	LOB domain-containing protein 23

Link Out ? help Back to Top
Phytozome	Thecc1EG008462t1
Entrez Gene	18608891

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]