PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008405t1

Common Name

TCM_008405

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 311aa MW: 35066.8 Da PI: 8.7965

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008405t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.5e-08	183	230	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + K K ++L + ++Y++ Lq Thecc1EG008405t1 183 KHSLAERVRREKISVRMKLLQSLVPGC-----DKlTGKTQMLDEIIRYVQCLQ 230 699*********************9.....46499***********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-14	177	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.42E-7	177	234	No hit	No description
PROSITE profile	PS50888	14.011	179	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-14	181	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-5	183	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-8	185	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MSAFPNQHLP SVINSFVEPN TLDCMSGFLR EESSATKTCF SSNFPDACFQ EIISGQYAQN 60 HVATTLNEVN LDVPFTFPVI PFAIANQEID STTIPMLLEL EQRGDDHQIT GEVSASENKR 120 KKVETKVERE KKREKKHKNI RGLQQAKESR LKPDIKNKKK VPEKVETDNY AHVRARRGEA 180 TDKHSLAERV RREKISVRMK LLQSLVPGCD KLTGKTQMLD EIIRYVQCLQ HQVEFISTEA 240 EEFSSLEKAW PLSFVESSST GQFKAFTAAT PAPTSSLLHQ TDAQQRLNIT TRDKAICYGK 300 RHIRTSSSLA *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970664.1	0.0	PREDICTED: transcription factor bHLH60
TrEMBL	A0A061E3W1	0.0	A0A061E3W1_THECC; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	EOX99664	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22754	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	8e-34	cryptochrome-interacting basic-helix-loop-helix 1

Link Out ? help Back to Top
Phytozome	Thecc1EG008405t1
Entrez Gene	18608863

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]