PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008334t1
Common NameTCM_008334
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 363aa    MW: 40717 Da    PI: 5.4692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008334t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.8e-20181230255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a++k++g
  Thecc1EG008334t1 181 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDRAALKFKG 230
                       7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-33180239IPR001471AP2/ERF domain
CDDcd000182.19E-34181239No hitNo description
PROSITE profilePS5103224.869181238IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22181239IPR016177DNA-binding domain
PfamPF008479.8E-14181230IPR001471AP2/ERF domain
SMARTSM003802.6E-39181244IPR001471AP2/ERF domain
PRINTSPR003671.3E-11182193IPR001471AP2/ERF domain
PRINTSPR003671.3E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MHWMSKRSLI TKEPKRGICW ITPKEDKLKF NIDGSVKDKL ESADCGCVLK DSEEKVDRRH  60
GKRPLPSETS EEKDKGRDDF TAAAENYAAT SWPEAADMTA MVTALTHVMG TGGSDEQLSF  120
TPSTVPLSQS AVKEEPDPPQ PVQDQESETM SKFLDIYNLV AFICDVMHWL SVCEENTRRR  180
HYRGVRQRPW GKWAAEIRDP KKAARVWLGT FDTAEDAALA YDRAALKFKG TKAKLNFPER  240
VQGNTEVSYF TGHGDSSTVR PDQNPTPAAT PPSWSQDSYP HLFQYAQLLS SSNDADISYY  300
TSNLFNQEPL SPQFPSMAAS PNISSQYHHQ DQTRFSTKYE SSSGSDYPEQ YGKDSDPSNR  360
SE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-27180241163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972039.11e-168PREDICTED: ethylene-responsive transcription factor ERF113
TrEMBLA0A061EBF00.0A0A061EBF0_THECC; AP2 6l, putative
STRINGEOX996130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-41related to AP2 6l
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]