PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008270t1
Common NameTCM_008270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 278aa    MW: 30298.8 Da    PI: 4.779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008270t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-193281255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Thecc1EG008270t1 32 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 81
                      678******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-303188No hitNo description
SMARTSM003807.9E-353295IPR001471AP2/ERF domain
PROSITE profilePS5103220.7053289IPR001471AP2/ERF domain
PfamPF008474.1E-123381IPR001471AP2/ERF domain
PRINTSPR003673.5E-83344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-293389IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-213390IPR016177DNA-binding domain
PRINTSPR003673.5E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDFNNSKTNS PSSSKNKRKQ HQQQPQQQQE TRFLGVRRRP WGRYAAEIRD PSTKERHWLG  60
TFDTAEEAAL AYDRAARSMR GSKARTNFVY SDMPAGSSVT SIISPDESQH DMSSIFTINP  120
PFHQQNDANQ NHLFFTQDPF SACQFSSGLP AGDGWTQDSD TVGSYRPITG VMDAGNGGSQ  180
HFSDDSELPP LPPDVSSTCY GSGSVGPDMG YGAWNDAGLF GFSDQSTNGF DSAVSGPYLG  240
FNTYEFVQHS PLFGRVPSVP DTVTDGFDLG SSSGYFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-193388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043742.10.0PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9FZ905e-50ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A061EB960.0A0A061EB96_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOX995730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.14e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]