PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008261t1
Common NameTCM_008261
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 390aa    MW: 42607.8 Da    PI: 8.5875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008261t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05628123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C+ C+k F r  nL+ H r H
  Thecc1EG008261t1  6 YICEVCHKGFQRDQNLQLHRRGH 28
                      89*******************88 PP
2zf-C2H213.50.0002282104123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H + +
  Thecc1EG008261t1  82 WKCDKCSKRYAVQSDWKAHTKIC 104
                       58*****************9987 PP
3zf-C2H211.40.001112130523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg+ Fsrk+++++H   +
  Thecc1EG008261t1 112 DCGTIFSRKDSFVTHRAFC 130
                       8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.97E-6528No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741628IPR007087Zinc finger, C2H2
SMARTSM003550.038628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551404777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.97E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRTNT QVKKRVYVCP EPNCVHHDPS  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH TKICGTREYR CDCGTIFSRK  120
DSFVTHRAFC DALTEENYKL NHNLAASGGI LQSQAQELFT SSMPSSDSCS NANTMMNLSV  180
SNEKMDNSLR PLSLNPAGVM ISSNLDPIFN PRTSLASPLA IGSAYTSATA LLQKAAEMGA  240
KISDHTIAPI LLRGFTGYST GSMNSAGSAQ EGSSMVGSNI ATNAASTNGL FVGDETYDKN  300
LEAGDLRCHH TVAPTALFDS HSLDSENGSA ANLLGEAYMR GGEKMTVDFL GGEPAGHQSI  360
GKKRSYDGNI VNLEYSNAQQ SPNNLRSNW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-3478141366Zinc finger protein JACKDAW
5b3h_F6e-3478141366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5826936e-85JX582693.1 Gossypium hirsutum clone NBRI_GE15573 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021285786.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ62e-94IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A061E5C80.0A0A061E5C8_THECC; Nucleic acid binding protein, putative
STRINGEOX995610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1801789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-97indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]