PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG008235t1 | ||||||||
Common Name | TCM_008235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 459aa MW: 50240.4 Da PI: 8.9541 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4.1e-05 | 59 | 79 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Thecc1EG008235t1 59 CEICGKGFQRDQNLQLHRRGH 79 *******************88 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Thecc1EG008235t1 133 WKCEKCSKRYAVQSDWKAHSKTC 155 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.05E-6 | 56 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.9E-5 | 56 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.489 | 57 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.076 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 121 | 154 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.05E-6 | 128 | 153 | No hit | No description |
SMART | SM00355 | 130 | 133 | 153 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MLEQMTEESI SNGFVQNPIA GSNPPLAKKK RNLPGTPDPE AEVIALSPKT LMATNRFLCE 60 ICGKGFQRDQ NLQLHRRGHN LPWKLKQRTT KEARKRVYVC PEKSCVHHHP SRALGDLTGI 120 KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY KCDCGTLFSR RDSFITHRAF 180 CDALAEETAR VNAASNMHSL ATSNINYHLM GNPLGPGMAQ HFSSIFKPIS SNDETLDQTR 240 RGLSLWMAQA SQGHDAIGKS LQEIHQFGSV NSGSIYSDPL VSTSNAPASD YPLNWVFGNK 300 VSSCNAEEIT STSLPLNNVK ENGPQLVSVP SLFSTQHHSH QTPSANMSAT ALLQKAAQIG 360 ATSTDTSFLG SFATKCSSSQ VQDGNKYSGL YGSNTPATTL GSDLENSAND ISTLNQLQMY 420 PAKRRHTQNE DSTGGQTRDF LGVGVQAICH PSSINGWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-37 | 129 | 196 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 4e-37 | 129 | 196 | 3 | 70 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT889665 | 1e-70 | KT889665.1 Corchorus olitorius cultivar Sudan Green microsatellite JROm311 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007043706.2 | 0.0 | PREDICTED: zinc finger protein MAGPIE isoform X2 | ||||
Swissprot | Q9ZWA6 | 1e-163 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A061E4I0 | 0.0 | A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein | ||||
STRING | EOX99537 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3710 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-166 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG008235t1 |
Entrez Gene | 18608782 |
Publications ? help Back to Top | |||
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