PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008229t1
Common NameTCM_008229
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 290aa    MW: 32658 Da    PI: 9.2043
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008229t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.7e-34591991128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk.. 79 
                       lp+G++F+Ptd+el+ e+L+ kv+++       ++++   i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+    t+  
  Thecc1EG008229t1  59 LPAGVKFDPTDQELL-EHLEGKVRSDArklhplIDEFIPtIEGEnGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhtdTEgg 149
                       799************.99******9996665443332333665557**********.555666688******************745553344 PP

               NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++v+  +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Thecc1EG008229t1 150 ETRWHKTGKTRPVFI-SGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199
                       667************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3854218IPR003441NAC domain
PROSITE profilePS5100533.8259218IPR003441NAC domain
PfamPF023656.7E-1660199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTWCNDCSDV QTIERSSPPS SHKTVIAERH KDCLVRTCPS CGHQIKCREQ AGIHDLPGLP  60
AGVKFDPTDQ ELLEHLEGKV RSDARKLHPL IDEFIPTIEG ENGICYTHPE KLPGVSKDGL  120
VRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVFISGKVKG YKKILVLYTN  180
YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VVSKVFYQTQ PRQCGSVKDS LPSKLKVQSG  240
HEGPHHLKNN GLVELYNPSF ISFDQGGQTR GNPSQLLPHF AVHDGSFIP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141460.0JQ914146.1 Gossypium hirsutum NAC domain protein 15 (NAC15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970130.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-132NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A061E3C00.0A0A061E3C0_THECC; NAC domain containing protein 73
STRINGEOX995340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-134NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]