PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008214t3

Common Name

TCM_008214

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 1782aa MW: 199940 Da PI: 5.1436

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008214t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.8e-19	28	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ +++++yps+++r+eL+ +lgL++rq ++WF+ rR k++k Thecc1EG008214t3 28 KRKMKTASQLEILEKTYAMEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 82 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-18	9	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.51E-16	15	82	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.503	23	83	IPR001356	Homeobox domain
SMART	SM00389	7.3E-17	25	87	IPR001356	Homeobox domain
CDD	cd00086	3.04E-14	26	82	No hit	No description
Pfam	PF00046	2.1E-16	28	82	IPR001356	Homeobox domain
PROSITE profile	PS50827	16.82	551	610	IPR018501	DDT domain
SMART	SM00571	4.6E-22	551	610	IPR018501	DDT domain
Pfam	PF02791	2.4E-16	552	607	IPR018501	DDT domain
Pfam	PF05066	1.5E-15	733	801	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-7	952	993	IPR028942	WHIM1 domain
Pfam	PF15613	1.4E-13	1134	1206	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1782 aa Download sequence Send to blast
MDSGGVSGGG GSSEGEKKKP PEGETKVKRK MKTASQLEIL EKTYAMEMYP SEATRAELSV 60 QLGLSDRQLQ MWFCHRRLKD RKAPPVKRRR KDSSLPAQVV GVAGEEMGGG EAENEHGSDV 120 SSLFGPGLHL RRAVPIPGMA VPRYYEMTHS MAELELRAIT FVELQLGEPI RDDGPMLGME 180 FDPLPPGAFG APIVGASTAV QQKQPGQPFE TKIYERLDTK AVKGSVRAVH EYQFLPEQPS 240 VRTETYERVA LSYHYGSPTD DPHARASSLS TGCSFVHGNE KVPSGYGFSG QMPNLNLLPQ 300 QSRQGHLLPT ASGEYDNCSR KNSLTNTTVD AIIGAHPISA LESPFVSSDR RVNLDEDALR 360 MERKRKSEEA RIAREVEAHE KRIRKELEKQ DILRRKREEQ IRKEMERHDR ERRKEEERLL 420 REKQREEERY QREQRRELER REKFLMKESI RAERMRQKEE LRKEKEAARL KAANERAIAR 480 KLAKESMELI EDERLELMEL AASSKGLSST LSLDFEILQN LDIFRDKLCV FPPKGVQLKR 540 SFSIEPWNSS EESIGNLLMV WRFLITFADV VGLWPFTLDE LVQAFHDYDP RLLGEIHVAL 600 LRSIIKDIED VARTPSTGLG ASQNNAANPG GGHLQIVEGA YAWGFDIRSW QGHLNMLTWP 660 EILRQFALSA GFGPQLKKRN IEQAYLRDEN EGNDGEDIIT NLRNGAAAEN AVAIMQERGF 720 SNPRRSRHRL TPGTVKFAAF HVLSLEDSDG LTILEVAEKI QKSGLRDLTT SKTPEASIAA 780 ALSRDTKLFE RTAPSTYCVR SPYRKDPADA EAILSAARER IRVLKSGFVG EDAEGAERDE 840 DSESDIAEDL EVDDLGAEIN PKKEMLNSEG SSSCDAKTIL GNEKEICEIL ETPQGEVRNV 900 CKALSSPTAG GLDEVKYIDA PVEQSMDAAG ICNGAANAGL EDTEIDESKL GEPWVQGLME 960 GDYSDLSVEE RLNALIALIS IAIEGNSIRV VLEERLEAAN ALKKQMWAEA QLDKRRMKEE 1020 FVLRTNFSSH MGNKMEPSLM MSSAECRQSP QIISDRKNNE SSVDLVVQQE CLNNPQNDQN 1080 YLNNVPSEGN MPIQDFSIGP DNLQYPQPGC AAERSRSQLK SYIGHKAEEM YVYRSLPLGQ 1140 DRRHNRYWRF ITSASWNDPG CGRIFVELLD GRWRLIDTEE GFDTLLSSLD VRGVRESHLH 1200 AMLQKIEMSF KEAVRRNKLH VNMERQNGDT IKKEANEMAS GPDWNVSFES PSSTVSGSDS 1260 DMSETSTSFS IELCRNEIEK NDALKRYRDF EKWMWKECFS LSSFCATKYG RRRCKQLLGV 1320 CDSCFNIYFF EDNHCPSCHR TDIASRSMLN FSEHVAQCAK KLQLGPGFAL DGLVISPLRI 1380 RLTKLQLALV EVSIPFEALQ SAWTEGYRNF WGMKLYSSTT AEELLQVLTL LESSITRDYL 1440 SSNFETTREL LSPSILSGGV GDDSTNLETV PVLPWIPKTT AAVALRLIEF DAAISYTLKQ 1500 RAETHKGAGE CMFPSKDAVV KNNQDHERMQ TTNRVEYLQE ASWVDVGIGF SGSGRGRGRG 1560 RGRGVTRGGR SQRRPTGSRS EFGKRITTTD NEGLVPVLGW KSRSRGRGGR KRGRRSARSR 1620 PKPAKRMVEI AGERENPKEI MEKSSRNLAT NTWNGDEVTR LKVRTADNAS SSERSEYNDE 1680 NGQATGDEYD YLAGEDYAGG FNGKADDVME GSEYNIDGDE DDDGEERDDI AEGEQGNFIV 1740 GGYINENSDE EEIRNGDDPE DSDPYVKQYG YSTEASSDFS E*

Sequence ? help Back to Top

Protein Sequence Length: 1782 aa Download sequence Send to blast

MDSGGVSGGG GSSEGEKKKP PEGETKVKRK MKTASQLEIL EKTYAMEMYP SEATRAELSV  60
QLGLSDRQLQ MWFCHRRLKD RKAPPVKRRR KDSSLPAQVV GVAGEEMGGG EAENEHGSDV  120
SSLFGPGLHL RRAVPIPGMA VPRYYEMTHS MAELELRAIT FVELQLGEPI RDDGPMLGME  180
FDPLPPGAFG APIVGASTAV QQKQPGQPFE TKIYERLDTK AVKGSVRAVH EYQFLPEQPS  240
VRTETYERVA LSYHYGSPTD DPHARASSLS TGCSFVHGNE KVPSGYGFSG QMPNLNLLPQ  300
QSRQGHLLPT ASGEYDNCSR KNSLTNTTVD AIIGAHPISA LESPFVSSDR RVNLDEDALR  360
MERKRKSEEA RIAREVEAHE KRIRKELEKQ DILRRKREEQ IRKEMERHDR ERRKEEERLL  420
REKQREEERY QREQRRELER REKFLMKESI RAERMRQKEE LRKEKEAARL KAANERAIAR  480
KLAKESMELI EDERLELMEL AASSKGLSST LSLDFEILQN LDIFRDKLCV FPPKGVQLKR  540
SFSIEPWNSS EESIGNLLMV WRFLITFADV VGLWPFTLDE LVQAFHDYDP RLLGEIHVAL  600
LRSIIKDIED VARTPSTGLG ASQNNAANPG GGHLQIVEGA YAWGFDIRSW QGHLNMLTWP  660
EILRQFALSA GFGPQLKKRN IEQAYLRDEN EGNDGEDIIT NLRNGAAAEN AVAIMQERGF  720
SNPRRSRHRL TPGTVKFAAF HVLSLEDSDG LTILEVAEKI QKSGLRDLTT SKTPEASIAA  780
ALSRDTKLFE RTAPSTYCVR SPYRKDPADA EAILSAARER IRVLKSGFVG EDAEGAERDE  840
DSESDIAEDL EVDDLGAEIN PKKEMLNSEG SSSCDAKTIL GNEKEICEIL ETPQGEVRNV  900
CKALSSPTAG GLDEVKYIDA PVEQSMDAAG ICNGAANAGL EDTEIDESKL GEPWVQGLME  960
GDYSDLSVEE RLNALIALIS IAIEGNSIRV VLEERLEAAN ALKKQMWAEA QLDKRRMKEE  1020
FVLRTNFSSH MGNKMEPSLM MSSAECRQSP QIISDRKNNE SSVDLVVQQE CLNNPQNDQN  1080
YLNNVPSEGN MPIQDFSIGP DNLQYPQPGC AAERSRSQLK SYIGHKAEEM YVYRSLPLGQ  1140
DRRHNRYWRF ITSASWNDPG CGRIFVELLD GRWRLIDTEE GFDTLLSSLD VRGVRESHLH  1200
AMLQKIEMSF KEAVRRNKLH VNMERQNGDT IKKEANEMAS GPDWNVSFES PSSTVSGSDS  1260
DMSETSTSFS IELCRNEIEK NDALKRYRDF EKWMWKECFS LSSFCATKYG RRRCKQLLGV  1320
CDSCFNIYFF EDNHCPSCHR TDIASRSMLN FSEHVAQCAK KLQLGPGFAL DGLVISPLRI  1380
RLTKLQLALV EVSIPFEALQ SAWTEGYRNF WGMKLYSSTT AEELLQVLTL LESSITRDYL  1440
SSNFETTREL LSPSILSGGV GDDSTNLETV PVLPWIPKTT AAVALRLIEF DAAISYTLKQ  1500
RAETHKGAGE CMFPSKDAVV KNNQDHERMQ TTNRVEYLQE ASWVDVGIGF SGSGRGRGRG  1560
RGRGVTRGGR SQRRPTGSRS EFGKRITTTD NEGLVPVLGW KSRSRGRGGR KRGRRSARSR  1620
PKPAKRMVEI AGERENPKEI MEKSSRNLAT NTWNGDEVTR LKVRTADNAS SSERSEYNDE  1680
NGQATGDEYD YLAGEDYAGG FNGKADDVME GSEYNIDGDE DDDGEERDDI AEGEQGNFIV  1740
GGYINENSDE EEIRNGDDPE DSDPYVKQYG YSTEASSDFS E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1554	1563	RGRGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017971057.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A061E3A9	0.0	A0A061E3A9_THECC; Homeodomain-like transcriptional regulator, putative isoform 3
STRING	EOX99523	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Thecc1EG008214t3
Entrez Gene	18608772

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]