PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008162t1
Common NameTCM_008162
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 201aa    MW: 21610.2 Da    PI: 9.8165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008162t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.8e-212776255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g
  Thecc1EG008162t1 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRG 76
                      6********.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-192784No hitNo description
Gene3DG3DSA:3.30.730.104.9E-332784IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-232785IPR016177DNA-binding domain
SMARTSM003801.1E-392790IPR001471AP2/ERF domain
PfamPF008478.6E-152776IPR001471AP2/ERF domain
PROSITE profilePS5103224.1972784IPR001471AP2/ERF domain
PRINTSPR003672.0E-112839IPR001471AP2/ERF domain
PRINTSPR003672.0E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAPKDKNASQ MLKKGNVNGN IKSKEVHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAAKAYDAA AREFRGPKAK TNFPLPDETN SYIGNKGQNQ QSPSQSSTVE ESSSPTVDRE  120
LKRGGSSVTG IVGRFPFACH QQLALGGQVY PVRFEPVGVE LSMGFGGGFQ SESDSSSVVD  180
CKPRLPGPGL DLNLPPPVDA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-222385164ATERF1
3gcc_A1e-222385164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022764086.11e-117ethylene-responsive transcription factor 9-like
SwissprotQ9FE678e-51ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A061E4C31e-145A0A061E4C3_THECC; Erf domain protein 9, putative
STRINGEOX994871e-146(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-37erf domain protein 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]