PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008158t1
Common NameTCM_008158
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 366aa    MW: 41225.9 Da    PI: 7.2723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008158t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-10120142426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         C++f+r+G C++Gd C FaHg
  Thecc1EG008158t1 120 TVCSDFRRGGGCPRGDDCDFAHG 142
                       68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-7115146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-9116144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155116144IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6116143IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7119142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4149180IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.024152176IPR000571Zinc finger, CCCH-type
SMARTSM003562.9152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSTACAEQHK FQPSHPQLPF KDIEIPPRKL LLSHNHFQEN ATMQIPFEAS LQQYLPSNRN  60
NAEDEGNDAD RYATDHFRMY EFKVRRCTRS RSHDWTDCPF AHPNEKARRR DPRRFRYSST  120
VCSDFRRGGG CPRGDDCDFA HGVFECWLHP TRYRTEACKD GKNCKRKICF FAHSSRELRL  180
LPDGSPKYKN SGSCSSSPMN KNDHCCLFCH SVTSSPTSTL LGLSHLSRSP SLSPPLSPVK  240
QRASLNGFSP VSRYGDRLSK FGTEMMSYKD AFNELMSSLE TMNFCEVSSP VAGVNNLNAN  300
ISWLDASFNG EDQQQFVLSP SRPSPSESGE YFGATKEIGG YENLNENGVA TDPDPDLGWV  360
NELLM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970585.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA11e-86C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A061E5480.0A0A061E548_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
STRINGEOX994810.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-57C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]