PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG008127t3 | ||||||||
Common Name | TCM_008127 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 185aa MW: 20914 Da PI: 9.1963 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 25 | 73 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++E++RR+++++ +++L +llP ++++ ls + +Av+YI+sLq Thecc1EG008127t3 25 RKIIEKNRRNHMKNLYSRLNSLLPRH--TSKEPLSLPDQIDEAVNYIQSLQ 73 589**********************7..37777*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.99E-6 | 19 | 77 | No hit | No description |
PROSITE profile | PS50888 | 12.239 | 20 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 20 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-10 | 24 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-8 | 25 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-5 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MELQMVYSVH KEMERSPCSS AKIERKIIEK NRRNHMKNLY SRLNSLLPRH TSKEPLSLPD 60 QIDEAVNYIQ SLQTRLKESR EKKESLMGRK RSHRCTTATA AEAAAVSKSP EISINETDSA 120 MEVVLMTGQD CQFMFYEMIR ILHEEGAQVL NANFSVLGNT IVHIVHAEQR TAAATRAMGL 180 RNPS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007043611.1 | 1e-122 | PREDICTED: transcription factor bHLH36 isoform X2 | ||||
TrEMBL | A0A061E322 | 1e-134 | A0A061E322_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3 | ||||
STRING | EOX99443 | 1e-111 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-35 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG008127t3 |
Entrez Gene | 18608722 |
Publications ? help Back to Top | |||
---|---|---|---|
|