PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007868t1
Common NameTCM_007868
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 342aa    MW: 39004.9 Da    PI: 5.2198
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007868t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l  +++++G  +W+  ++  g++R++k+c++rw +yl
  Thecc1EG007868t1 14 KGAWSAEEDHKLRSYIQRYGHWNWRELPKFAGLKRCGKSCRLRWMNYL 61
                      79******************99************************97 PP
2Myb_DNA-binding57.72.6e-1868112248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       g+ T+eEd l+ +++++lG++ W+tIa++++ gRt++++k++w+++l
  Thecc1EG007868t1  68 GNYTEEEDALIMKLHEELGNR-WSTIAARLP-GRTDNDIKNHWHTHL 112
                       789******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.828961IPR017930Myb domain
SuperFamilySSF466891.04E-2911108IPR009057Homeodomain-like
SMARTSM007179.6E-101363IPR001005SANT/Myb domain
PfamPF002491.8E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-221568IPR009057Homeodomain-like
CDDcd001671.20E-81661No hitNo description
PROSITE profilePS5129426.12562116IPR017930Myb domain
SMARTSM007173.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1668112IPR001005SANT/Myb domain
CDDcd001676.36E-1369112No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVRAPFYDKN GMKKGAWSAE EDHKLRSYIQ RYGHWNWREL PKFAGLKRCG KSCRLRWMNY  60
LQPQVKHGNY TEEEDALIMK LHEELGNRWS TIAARLPGRT DNDIKNHWHT HLKKRAKRNL  120
KTSDGKEYDY TTSQTEATHN SEGEAESIII DTLPSMILES SPLSPTTSSS TELYSFSSES  180
GFISSLNIGA TEDICLHSSE IYEDQSSGDF WSEPFVADNI YNQDGYPSFL ARGEFALPLP  240
YDMYFDDSAD LLYQVLMHEL PPTHFYFDVI GLWLRMVLAD LSFGRNVNGE SSHQMPLLNA  300
CHVIPALALQ PPYFITDDIL ILTYTAFDIT LFTLTAAISI L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-30141154104C-Myb DNA-Binding Domain
1msf_C9e-30141154104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970607.10.0PREDICTED: transcription factor WER
TrEMBLA0A061EAH80.0A0A061EAH8_THECC; Myb domain protein 15, putative
STRINGEOX992630.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17768510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-56myb domain protein 14
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]