PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007802t1

Common Name

TCM_007802

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 345aa MW: 39339.9 Da PI: 8.0137

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007802t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.2e-08	213	258	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+e r+RR+++ ++ L++l+P++ kK++ ++L++A +YI+ L+ Thecc1EG007802t1 213 HSELARKRRQKLSDKTRCLQKLMPWD-----KKMDTGTMLQEAYKYIRFLE 258 89999******************9.....9**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.611	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-12	208	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.75E-9	212	262	No hit	No description
Pfam	PF00010	3.3E-6	213	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-11	213	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-8	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MCVSLKILLY SRFHFCYTEH RCYVAFCTFP LSSLNFHCYH FSVFDINSMK MERGFGSTHP 60 CYPPAFTAEF SINSSYEANF NSIFNDPNLQ PLLPLPSDPS TFNFFSQDFP SLPLEPQLPV 120 PDLDSLYSSS LPTKIPDILP DSTQFLDFFN KPLPDLHSLE QPHRQPHFTE PSVSSSTRKL 180 KRTRLDLNLS DNNPQTLDSI VQSFNSPSPV IPHSELARKR RQKLSDKTRC LQKLMPWDKK 240 MDTGTMLQEA YKYIRFLEAQ VSILQSMPIS SSFASTEHNA PVGFDYGGLG RLNRQQLLQV 300 LVNSPVAQTM LYSQGFCVFA YEQLVSLKKA KERKAVLQQF LFGN*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MCVSLKILLY SRFHFCYTEH RCYVAFCTFP LSSLNFHCYH FSVFDINSMK MERGFGSTHP  60
CYPPAFTAEF SINSSYEANF NSIFNDPNLQ PLLPLPSDPS TFNFFSQDFP SLPLEPQLPV  120
PDLDSLYSSS LPTKIPDILP DSTQFLDFFN KPLPDLHSLE QPHRQPHFTE PSVSSSTRKL  180
KRTRLDLNLS DNNPQTLDSI VQSFNSPSPV IPHSELARKR RQKLSDKTRC LQKLMPWDKK  240
MDTGTMLQEA YKYIRFLEAQ VSILQSMPIS SSFASTEHNA PVGFDYGGLG RLNRQQLLQV  300
LVNSPVAQTM LYSQGFCVFA YEQLVSLKKA KERKAVLQQF LFGN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021298831.1	0.0	transcription factor bHLH117
TrEMBL	A0A061E4F6	0.0	A0A061E4F6_THECC; DNA binding-like protein
STRING	EOX99201	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	2e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG007802t1
Entrez Gene	18608549

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]