PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG007777t1 | ||||||||
Common Name | TCM_007777 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 25653.4 Da PI: 9.1278 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 1.9e-10 | 75 | 121 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RR+++N++f eL +l + + +K +K++iL Av+ +++L Thecc1EG007777t1 75 KACREKLRRNKLNDRFLELGAILEPG---RPPKADKVAILIVAVKMVHQL 121 678**********************8...89***************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.928 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-8 | 74 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.50E-7 | 74 | 126 | No hit | No description |
SMART | SM00353 | 8.2E-8 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-13 | 76 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-12 | 77 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MELDSSENTN WLLDYGIPDF PRPAAGYGWP PQTTLDARSN LSAAVDCSFP DSDSLKEVAS 60 RKRLKSESCY ASGSKACREK LRRNKLNDRF LELGAILEPG RPPKADKVAI LIVAVKMVHQ 120 LRSEAQKLKE LNEELQAKIK ELKAEKNELR DEKQRLKADK EKLEQQVNAM STRPGFLPHP 180 TPMAAAFASQ GQAAGNKLMP YIGFPGVAMW QFMPPAAVDT SQDHVLRPPV A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007043353.2 | 1e-170 | PREDICTED: transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 2e-94 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A061E2F9 | 1e-170 | A0A061E2F9_THECC; Basic helix-loop-helix DNA-binding superfamily protein | ||||
STRING | EOX99184 | 1e-170 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 6e-89 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG007777t1 |
Entrez Gene | 18608535 |