PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007672t7
Common NameTCM_007672
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 297aa    MW: 31531.9 Da    PI: 7.3905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007672t7genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.6e-101154344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       W+ e d+ + +a + +  +   +W++Ia+ ++ g+tl+++k ++
  Thecc1EG007672t7 11 EWSREQDKAFENALATYAEDssdRWEKIAADVP-GKTLEEIKKHY 54
                      7******************9*************.**********9 PP

2Myb_DNA-binding422.2e-13122166347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Thecc1EG007672t7 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                       6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.059760IPR017884SANT domain
SMARTSM007171.6E-8860IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-111066IPR009057Homeodomain-like
PfamPF002494.3E-71154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-51155IPR009057Homeodomain-like
CDDcd001671.70E-81157No hitNo description
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.17E-16117172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17119169IPR006447Myb domain, plants
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
PfamPF002492.7E-11122166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10122165IPR009057Homeodomain-like
CDDcd001678.46E-10122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTVDEAGSSS EWSREQDKAF ENALATYAED SSDRWEKIAA DVPGKTLEEI KKHYELLEDD  60
VSRIESGCVP LPSYNSLEGS AGLAGDEGTG KKGSSHLGHY NSESNNGSKN SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVGN GDISAPQGPI TGQSNGIATG GSSGKSTKQP PQHPAAPPAV GMYGAPTIGQ  240
PIGGPLVSAV GTPVNLPAPA HMAYGVRAPV PGTVVPGAPM NMGPVTYPMS HTSAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-19780679RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043217.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_007043218.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_007043219.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_007043221.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-135SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A061E9T30.0A0A061E9T3_THECC; DNA binding protein, putative isoform 1
STRINGEOX990470.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-124MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]