PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007539t1

Common Name

TCM_007539

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 305aa MW: 33340.3 Da PI: 8.1985

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007539t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	5.9e-12	108	134	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk e Cr + ++G+C++G+rC+F+Hg+ Thecc1EG007539t1 108 YKSEVCRAWEEFGHCRFGSRCQFMHGK 134 99***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.7E-6	107	134	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-13	107	139	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.976	107	135	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.3E-8	107	138	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.6E-9	108	134	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MDSFYKESNK LNVLNSNIPK LMIPARIRAN YYSSPENLIK YLRSNSLSSS GNSSSGKSSF 60 RSSLSPQSDK TPVNVVEEDV LVMDGVLVAS DTNIVGPGSP SSGSVGFYKS EVCRAWEEFG 120 HCRFGSRCQF MHGKEEERPT CFPFRSKSEA QMYKSYASTI SGTYGSKSRL LHPVIETAAT 180 TAQRDTSTRP HYTSQSSTDP IKPEETIIHS ISTAQLENTH LTANFTMKPM TNKTSTSIIR 240 ADAGATTFTN GTYWSPQDDG IDVTLPSLPG KTPSREDVHA YIDGVLYGPA TKRRLPVFSA 300 ICPE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007043030.1	0.0	PREDICTED: zinc finger protein zfs1
TrEMBL	A0A061E3D7	0.0	A0A061E3D7_THECC; Uncharacterized protein
STRING	EOX98861	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15770	8	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	9e-07	C3H family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG007539t1
Entrez Gene	18608339

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]