PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007482t2
Common NameTCM_007482
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CAMTA
Protein Properties Length: 933aa    MW: 104375 Da    PI: 5.7172
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007482t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1185.17.3e-58201362118
              CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                       l+ ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+een++f
  Thecc1EG007482t2  20 LEAQHRWLRPAEICEILRNYQKFHISSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENF 112
                       5679***************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylevk 118
                       qrr+yw+Le+el +iv+vhylevk
  Thecc1EG007482t2 113 QRRSYWMLEQELMHIVFVHYLEVK 136
                       *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.87315141IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-8318136IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-5121135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.0E-6468580IPR013783Immunoglobulin-like fold
PfamPF018331.7E-5494573IPR002909IPT domain
SuperFamilySSF812965.04E-17494580IPR014756Immunoglobulin E-set
PfamPF127969.7E-7675754IPR020683Ankyrin repeat-containing domain
CDDcd002045.41E-16676785No hitNo description
PROSITE profilePS5029719.359676787IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-18677787IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-19679789IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0026726755IPR002110Ankyrin repeat
PROSITE profilePS5008810.018726758IPR002110Ankyrin repeat
SMARTSM002482000765794IPR002110Ankyrin repeat
PROSITE profilePS500968.096888917IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 933 aa     Download sequence    Send to blast
MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILRNYQ KFHISSEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML  120
EQELMHIVFV HYLEVKGSRT IGGIRDTGDV SNSQTSSPST SSYSVSHTKA PSGNTDSASP  180
TSTLTSLCED ADSEDSHQAS SRIPTSPQVG NATMMDKMDP GFLNPYSSHP FPGRSSIPGV  240
NEVSHLHGDR PMGIDYGTYM TEAQKTLDLA SWEGGLEQYM PLYPVVSSHA SMASAQPDTM  300
SISQQQMMKG KQLDVESADK EFGNLLPTQS NWQIPLADNA LELPKWPMDQ SSNFELAYDT  360
RLFEQKTDDF HLPNALEEFT NNDVLNEQPV HKNLQTQLIN ADTNSVMKSY PENDTHLEGN  420
INYAFSLKKS LLDGEESLKK VDSFSRWITK ELGEVDNLQM QSSSGIAWSS VECGNVSDDA  480
SLSPSISQDQ LFSIVDFSPK WAYTDLETEV LIIGTFLKSQ EEVAKYNWSC MFGEVEVPAE  540
VIADGILFCH APPHSVGQVP FYVTCSNRLA CSEVREFDYR AGFAKGIHVS HIYGVASTEM  600
LLRFQMLLSL KSFSSLNHHL EGVGEKRDLI AKIILMKEEE ECHQIVDPSS DKDLSQREEK  660
EWLLQKLMKE KLYSWLLHKI VEDGKGPNIL DEKGQGVLHL AAALGYDWAL KPTVTAGVSI  720
NFRDVNGWTA LHWAAFCGRE QTVAILVFLG ADPGALTDPS PEFPLGRTPA DLASDNGHKG  780
ISGFLAESSL TSYLSSLTMN DAKAAVQTVS ERMATPVNDS DLQDILLKDS ITAVCNATQA  840
ADRIHQMFRL QSFQRKQLTE SGDAVSDEHA ISIVTAKARR SLQSEGVAHA AATQIQKKFR  900
GWKKRKEFLL IRQRIVKIQG LQYGYEQYRR SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ydw_A3e-1168078566165DARPIN 44C12V5
4ydw_B3e-1168078566165DARPIN 44C12V5
4ydy_A3e-1168078566165DARPIN 44C12V5
4ydy_B3e-1168078566165DARPIN 44C12V5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588108e-74JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042960.20.0PREDICTED: calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A061E2E30.0A0A061E2E3_THECC; Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains, putative isoform 2
STRINGEOX987910.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]