PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007360t1
Common NameTCM_007360
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 314aa    MW: 33179.7 Da    PI: 4.7568
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007360t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.4e-16223259135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Thecc1EG007360t1 223 CTHCGISSksTPMMRRGPTGPRTLCNACGLKWANKGV 259
                       *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.92983118IPR010399Tify domain
SMARTSM009798.1E-1283118IPR010399Tify domain
PfamPF062001.5E-1286117IPR010399Tify domain
PfamPF062032.8E-16150192IPR010402CCT domain
PROSITE profilePS5101713.225150192IPR010402CCT domain
PROSITE profilePS501149.578217274IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-13217270IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-12220271No hitNo description
Gene3DG3DSA:3.30.50.101.4E-15221264IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.32E-16222272No hitNo description
PfamPF003206.1E-14223259IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MANSNHQPTS MYGSGAMNMQ QNLEEEDDDV PGGTGGGGEE SVDNPQIGYQ ETGGVVTVMN  60
NGMEEASHAN IYGQGSDLTV VPGNGGSDQL TLSFQGEVYV FDSVSPDKVQ AVLLLLGGYE  120
IPSGIPALGT VPVTQRGLGD FPGRAIQPQR AASLNRFREK RKERCFDKKI RYTVRKEVAL  180
RMQRKKGQFT SSKAISDEVA SASSGWSVTP GSGQDESMEE TSCTHCGISS KSTPMMRRGP  240
TGPRTLCNAC GLKWANKGVL RDLSKVSTIP IQDASAKPTE QSDAEANDSE AVTVTTDVVS  300
SSNGDNSSVS AER*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042820.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G02e-80GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A061E2X90.0A0A061E2X9_THECC; Zim-like 2
STRINGEOX986510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-79ZIM-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]