PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007358t4
Common NameTCM_007358
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 334aa    MW: 36724.5 Da    PI: 4.6304
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007358t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.13.3e-15189225135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg ++  Tp +Rrgp g++tLCnaCGl+++ k++
  Thecc1EG007358t4 189 CHHCGISEklTPAMRRGPAGPRTLCNACGLMWANKET 225
                       *********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.7385489IPR010399Tify domain
SMARTSM009791.3E-65489IPR010399Tify domain
PfamPF062006.5E-105888IPR010399Tify domain
PfamPF062036.1E-15122163IPR010402CCT domain
PROSITE profilePS5101712.56122164IPR010402CCT domain
SMARTSM004018.4E-10183236IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-13187226IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.95E-10187229No hitNo description
CDDcd002024.08E-12188242No hitNo description
PROSITE patternPS003440189216IPR000679Zinc finger, GATA-type
PfamPF003205.9E-13189225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDTVNQRGLL ARPFGDEYDD GGLEGEEFSG PHRLVMNGVA SSVSHGNGVG GFVQATRTSE  60
LTIAFEGEVY VFPAVTPEKV QAVLLLLGGR GASTNVPSSE FLLQEKVKVV GGSSQDSKLS  120
RRIASLVRFR EKRNERCFEK KIRYTCRKEV AQRMHRKNGQ FASLKECYNS ADGSWDQSDG  180
TPESALRRCH HCGISEKLTP AMRRGPAGPR TLCNACGLMW ANKETPTDTK PSTMEPENSF  240
ANDDEEGSPE ETKPVHLDSV NHLIRSNEQE FAENSHPFPI QVVNSSVNLD DEDMQETLEE  300
LADASGSDFE IPSHFDEQVD IDDTNIGTEW PGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042819.10.0PREDICTED: GATA transcription factor 24 isoform X2
SwissprotQ5Z4U59e-55GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A061E1430.0A0A061E143_THECC; ZIM-like 1 isoform 4
STRINGEOX986470.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.13e-55ZIM-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]