PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007358t1
Common NameTCM_007358
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 354aa    MW: 38946.9 Da    PI: 4.7576
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007358t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.82e-15189225135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg ++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Thecc1EG007358t1 189 CHHCGISEklTPAMRRGPAGPRTLCNACGLMWANKGT 225
                       **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.7385489IPR010399Tify domain
SMARTSM009791.3E-65489IPR010399Tify domain
PfamPF062007.0E-105888IPR010399Tify domain
PfamPF062036.6E-15122163IPR010402CCT domain
PROSITE profilePS5101712.56122164IPR010402CCT domain
SMARTSM004012.2E-9183236IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14187229IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.52E-11187233No hitNo description
CDDcd002021.72E-14188232No hitNo description
PROSITE patternPS003440189216IPR000679Zinc finger, GATA-type
PfamPF003202.9E-13189225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDTVNQRGLL ARPFGDEYDD GGLEGEEFSG PHRLVMNGVA SSVSHGNGVG GFVQATRTSE  60
LTIAFEGEVY VFPAVTPEKV QAVLLLLGGR GASTNVPSSE FLLQEKVKVV GGSSQDSKLS  120
RRIASLVRFR EKRNERCFEK KIRYTCRKEV AQRMHRKNGQ FASLKECYNS ADGSWDQSDG  180
TPESALRRCH HCGISEKLTP AMRRGPAGPR TLCNACGLMW ANKGTLRDLR KGGRNAHFDS  240
NEPETPTDTK PSTMEPENSF ANDDEEGSPE ETKPVHLDSV NHLIRSNEQE FAENSHPFPI  300
QVVNSSVNLD DEDMQETLEE LADASGSDFE IPSHFDEQVD IDDTNIGTEW PGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970974.10.0PREDICTED: GATA transcription factor 24 isoform X1
SwissprotQ5Z4U57e-59GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A061E2310.0A0A061E231_THECC; ZIM-like 1 isoform 1
STRINGEOX986470.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.19e-59ZIM-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]