PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007292t2
Common NameTCM_007292
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 307aa    MW: 34391.2 Da    PI: 6.7272
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007292t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.97.1e-16220280363
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       +l+++rr+q NRe+A+rsR+RK++e e+Le ++++L++e +aL +el++ ++e+ +l  e+
  Thecc1EG007292t2 220 DLRKQRRRQLNRESAKRSRLRKQQEREKLEARIEVLKGESSALCEELNRVSEECGRLYEEN 280
                       589***************************************************9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-12214276No hitNo description
SMARTSM003386.0E-11218282IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.507220283IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.73E-9221277No hitNo description
PfamPF001704.9E-13221280IPR004827Basic-leucine zipper domain
CDDcd147021.95E-16223273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGTEDRNSIA KSKPPKQKDS REVRRLAKSH KDKETSAAPA PFPAPHWLNS VQVQDSNRIQ  60
YTQDGFSLPN SQLHYLPQLM QPNPIPQFYP GFYHMKSPHA YFNAVGDSML PISEKGKDIP  120
REKDLDSGRS KDEGTSYRNH THDPSRSAAS GDEASPDGRD DANQDLSATK KQRLNQTKAD  180
DYIMVDGSAS DVLEPALNLA ISNSSAGSIS TTAKISDVYD LRKQRRRQLN RESAKRSRLR  240
KQQEREKLEA RIEVLKGESS ALCEELNRVS EECGRLYEEN KLIMEELIPM CGPDDDLAAL  300
WAELHA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042737.20.0PREDICTED: G-box-binding factor 1 isoform X1
RefseqXP_017971890.10.0PREDICTED: G-box-binding factor 1 isoform X1
RefseqXP_017971891.10.0PREDICTED: G-box-binding factor 1 isoform X1
TrEMBLA0A061E8G80.0A0A061E8G8_THECC; Uncharacterized protein isoform 2
STRINGEOX985670.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.25e-19G-box binding factor 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]