PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG007242t2 | ||||||||
Common Name | TCM_007242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 301aa MW: 33225.3 Da PI: 10.3575 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.1 | 7.2e-12 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ Thecc1EG007242t2 5 KQKWTPEEEAALKSGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55 79***********************************88***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.897 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.83E-15 | 2 | 63 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.21E-17 | 6 | 56 | No hit | No description |
SuperFamily | SSF46785 | 5.99E-17 | 118 | 197 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 1.9E-13 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.5E-14 | 119 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 24.13 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 5.6E-8 | 125 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGAPKQKWTP EEEAALKSGV IKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA 60 NGWGSRDKAR LAVKRTPSIL KQEDGAMALT VVPSDEEIAD AKPIAVPSTT VQIPTSTKRS 120 IVRLDNLIME AITSLKEPGG SNKTTIAAYI EEQYWAPPDF KRLLSAKLKY LMACGRLIKV 180 KRRYRIAPAL SFSDRRRNHP MPFLEGRQRV SPRFDRNDFH ILTKSQIDLE LAKMRTMTPQ 240 EAAAAAARAV AEAEAAIAEA EEAAREAEVA EADAEAAQAF AEAAMKTLKG RNNQKVVVRG 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR828561 | 5e-60 | FR828561.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb10 gene), cultivar Yellow Island. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007042663.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_007042664.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1 isoform X1 | ||||
Swissprot | Q8VWK4 | 1e-105 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A061E0J6 | 0.0 | A0A061E0J6_THECC; Telomere repeat binding factor 1 isoform 1 | ||||
STRING | EOX98495 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-103 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG007242t2 |
Entrez Gene | 18608101 |