PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007220t1
Common NameTCM_007220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 359aa    MW: 38796.6 Da    PI: 4.6619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007220t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-102823221055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Thecc1EG007220t1 282 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 322
                       9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14274337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-12277331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-12281326No hitNo description
PfamPF000101.1E-7282322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSMGAAILE GEWSSLSGTY TTEEADFMAQ LLSNCPLPNE LDGSSNLGIP STYWPGHHST  60
ISMKAASYCS SDIADTSSYS FSQGSSYSAG SSIVFPSSSQ ESYYLSDSHP IFVANNSPMS  120
MDFCMEDATN TSSYLVEGDD CLNQEMGNGN VEQAGKSHQE PALPNKNLEP KRESEIPQPE  180
PVTEIKSNNI SENSKKRSRS SGDVQKNRQN ARSKKNQGSA STTNNDKDGN AGLNGQSSAS  240
CSSDDDSNAS QELNGGQAAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP  300
NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDL KVATPKRS*
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042632.20.0PREDICTED: transcription factor bHLH84
SwissprotQ84WK09e-76BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A061E8550.0A0A061E855_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOX984630.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.15e-55ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  4. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]