PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007211t1

Common Name

TCM_007211

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 264aa MW: 28478.6 Da PI: 8.003

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007211t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.4	5.3e-29	51	152	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++++ +r+++++sl++eA ra +Pv+Gavg++++++++++ Thecc1EG007211t1 51 SCNGCRVLRKGCSENCMLRQSLqcidnPQAQAHATVFVAKFFGRAGLMSFLSSVSKPQRPALFHSLMFEAVGRAVNPVSGAVGLLWTGNWNVC 143 6********************99**************************************************************** PP DUF260 89 qlkaelall 97 q++++++l+ Thecc1EG007211t1 144 QSAVQTVLR 152 9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.758	50	156	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-24	51	149	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MHSLSLPLYI CLCALLIFLS FNHSLPTNPL DARNPISSPS FFSFSCAETM SCNGCRVLRK 60 GCSENCMLRQ SLQCIDNPQA QAHATVFVAK FFGRAGLMSF LSSVSKPQRP ALFHSLMFEA 120 VGRAVNPVSG AVGLLWTGNW NVCQSAVQTV LRGGTLQPLP KFSGGVSGSD FEDVSETVGG 180 TGLQCFRTRE EDFVKRKGFG DVVKCEANDL DLCLMIGDDR AGKRRREATP SEESEMTTLG 240 SRSDAGDGSS SKGDARKLLR LFI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042619.2	0.0	PREDICTED: LOB domain-containing protein 37
TrEMBL	A0A061E0E6	0.0	A0A061E0E6_THECC; LOB domain-containing protein 38, putative
STRING	EOX98450	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22269	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-60	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Thecc1EG007211t1
Entrez Gene	18608071

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]