PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG007159t4 | ||||||||
Common Name | TCM_007159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 21997.3 Da PI: 8.8452 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00053 | 158 | 196 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+ YI+ L Thecc1EG007159t4 158 ARKEKVGDRITALQQLVSPF-----GKTDTASVLHEAMGYIRFL 196 677888899********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.477 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-9 | 154 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-6 | 157 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MMAETDQGFE GDQGTATTTS FPQLLFGGDD DVVSLDLGQS FNYTYSSFPA HEKTPKMLCF 60 GGQQTDAEIV FGESAASTTK TATTPQRSGV TCSDSSSASS GNNNKSVKTP SKSTRKRDRG 120 RESVECTGAI VTAQPVSQRT NKKSKVENPA TSTGHAKARK EKVGDRITAL QQLVSPFGKT 180 DTASVLHEAM GYIRFLHDQW GSRRA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007042552.2 | 1e-143 | PREDICTED: transcription factor bHLH113 isoform X1 | ||||
TrEMBL | A0A061E217 | 1e-150 | A0A061E217_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 4 (Fragment) | ||||
STRING | EOX98383 | 1e-144 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 2e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG007159t4 |
Entrez Gene | 18608026 |
Publications ? help Back to Top | |||
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